bug#45399: closed ([PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).)

[GNU bug Tracking System]

Your message dated Tue, 29 Dec 2020 17:42:16 +0100
with message-id <87czyslg2f.fsf@elephly.net>
and subject line Re: [bug#45399] [PATCH 00/10] Move some Bioconductor packages 
to (gnu packages bioconductor).
has caused the debbugs.gnu.org bug report #45399,
regarding [PATCH 00/10] Move some Bioconductor packages to (gnu packages 
bioconductor).
to be marked as done.

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45399: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=45399
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
>
>
>
>
> Date: 
>
> Wed, 23 Dec 2020 19:03:38 +0100
>
>
>
>
> Hi,
>
> Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
> bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 7
> pacth set like this one are coming...
>
> 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>
>
>
> To transfer the Copyright, I use:
>
>    git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>
>
> Then, after the move, I run:
>
>    ./pre-inst-env guix build r-<name> --no-grafts
>    ./pre-inst-env guix build r-<name> --no-grafts --check
>
> and at the end of the series, I run:
>
>     make as-derivation
>
> to check that "guix pull" is not broken; just in case.
>
> Last, I have not carefully checked the imported modules, so it could
> be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
> in gnu/packages/bioinformatics.scm.
>
> All the best,
> simon
>
> zimoun (10):
>   gnu: r-sushi: Move to (gnu packages bioconductor).
>   gnu: r-gwascat: Move to (gnu packages bioconductor).
>   gnu: r-gviz: Move to (gnu packages bioconductor).
>   gnu: r-gqtlstats: Move to (gnu packages bioconductor).
>   gnu: r-ldblock: Move to (gnu packages bioconductor).
>   gnu: r-erma: Move to (gnu packages bioconductor).
>   gnu: r-homo-sapiens: Move to (gnu packages bioconductor).
>   gnu: r-snpstats: Move to (gnu packages bioconductor).
>   gnu: r-gqtlstats: Move to (gnu packages bioconductor).
>   gnu: r-ggbio: Move to (gnu packages bioconductor).
>
>  gnu/packages/bioconductor.scm   | 400 +++++++++++++++++++++++++++++++
>  gnu/packages/bioinformatics.scm | 405 --------------------------------
>  2 files changed, 400 insertions(+), 405 deletions(-)
>
>
> base-commit: 4994e1f2bd9b573d2c13abf2b98ec204f510ad11
> -- 
> 2.29.2
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
>
>
>
>
> Date: 
>
> Tue, 29 Dec 2020 17:42:16 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.4.13; emacs 27.1
>
>
>
>
> zimoun <zimon.toutoune@gmail.com> writes:
>
> > Hi,
> >
> > Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
> > bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 7
> > pacth set like this one are coming...
> >
> > 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>
>
> Excellent!
>
> Pushed with commit 610cd6a170.
>
> Thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---