bug#47010: closed ([PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).)

[GNU bug Tracking System]

Your message dated Fri, 12 Mar 2021 14:54:17 +0100
with message-id <87tupgo4ty.fsf@elephly.net>
and subject line [PATCH 00/10] Move some Bioconductor packages to (gnu packages 
bioconductor).
has caused the debbugs.gnu.org bug report #47010,
regarding [PATCH 00/10] Move some Bioconductor packages to (gnu packages 
bioconductor).
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
47010: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=47010
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
>
>
>
>
> Date: 
>
> Mon,  8 Mar 2021 18:55:58 +0100
>
>
>
>
> Hi,
>
> Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
> bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 6
> pacth set like this one are coming...
>
> 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>
>
>
> To transfer the Copyright, I use:
>
>    git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>
>
> Then, after the move, I run:
>
>    ./pre-inst-env guix build r-<name> --no-grafts
>    ./pre-inst-env guix build r-<name> --no-grafts --check
>
> and at the end of the series, I run:
>
>     make as-derivation
>
> to check that "guix pull" is not broken; just in case.
>
> Last, I have not carefully checked the imported modules, so it could
> be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
> in gnu/packages/bioinformatics.scm.
>
> All the best,
> simon
>
> zimoun (10):
>   gnu: r-genefilter: Move to (gnu packages bioconductor).
>   gnu: r-deseq2: Move to (gnu packages bioconductor).
>   gnu: r-dexseq: Move to (gnu packages bioconductor).
>   gnu: r-annotationforge: Move to (gnu packages bioconductor).
>   gnu: r-rbgl: Move to (gnu packages bioconductor).
>   gnu: r-gseabase: Move to (gnu packages bioconductor).
>   gnu: r-category: Move to (gnu packages bioconductor).
>   gnu: r-gostats: Move to (gnu packages bioconductor).
>   gnu: r-shortread: Move to (gnu packages bioconductor).
>   gnu: r-systempiper: Move to (gnu packages bioconductor).
>
>  gnu/packages/bioconductor.scm   | 354 ++++++++++++++++++++++++++++++++
>  gnu/packages/bioinformatics.scm | 354 --------------------------------
>  2 files changed, 354 insertions(+), 354 deletions(-)
>
>
> base-commit: 612dc6dbe0904f39238a89d3b63ee66abd861b51
> -- 
> 2.30.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
>
>
>
>
> Date: 
>
> Fri, 12 Mar 2021 14:54:17 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.4.14; emacs 27.1
>
>
>
>
> Thank you, pushed to the “master” branch with commit df6b3c25bb.
> -- 
> Ricardo
>
>
> --- End Message ---