bug#47156: closed ([PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).)

[GNU bug Tracking System]

Your message dated Mon, 15 Mar 2021 14:09:02 +0100
with message-id <874khco975.fsf@elephly.net>
and subject line Re: [PATCH 00/10] Move some Bioconductor packages to (gnu 
packages bioconductor).
has caused the debbugs.gnu.org bug report #47156,
regarding [PATCH 00/10] Move some Bioconductor packages to (gnu packages 
bioconductor).
to be marked as done.

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47156: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=47156
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
>
>
>
>
> Date: 
>
> Mon, 15 Mar 2021 13:58:00 +0100
>
>
>
>
> Hi,
>
> Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
> bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 5
> pacth set like this one are coming...
>
> 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>
>
>
> To transfer the Copyright, I use:
>
>    git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>
>
> Then, after the move, I run:
>
>    ./pre-inst-env guix build r-<name> --no-grafts
>    ./pre-inst-env guix build r-<name> --no-grafts --check
>
> and at the end of the series, I run:
>
>     make as-derivation
>
> to check that "guix pull" is not broken; just in case.
>
> Last, I have not carefully checked the imported modules, so it could
> be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
> in gnu/packages/bioinformatics.scm.
>
> All the best,
> simon
>
> zimoun (10):
>   gnu: r-grohmm: Move to (gnu packages bioconductor).
>   gnu: r-biocviews: Move to (gnu packages bioconductor).
>   gnu: r-biocstyle: Move to (gnu packages bioconductor).
>   gnu: r-bioccheck: Move to (gnu packages bioconductor).
>   gnu: r-s4vectors: Move to (gnu packages bioconductor).
>   gnu: r-iranges: Move to (gnu packages bioconductor).
>   gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).
>   gnu: r-genomeinfodb: Move to (gnu packages bioconductor).
>   gnu: r-edger: Move to (gnu packages bioconductor).
>   gnu: r-variantannotation: Move to (gnu packages bioconductor).
>
>  gnu/packages/bioconductor.scm   | 303 +++++++++++++++++++++++++++++++
>  gnu/packages/bioinformatics.scm | 307 --------------------------------
>  2 files changed, 303 insertions(+), 307 deletions(-)
>
>
> base-commit: 1ed435bf394eee1a6cd9c354efb405920c212f0e
> -- 
> 2.30.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
>
>
>
>
> Date: 
>
> Mon, 15 Mar 2021 14:09:02 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.4.14; emacs 27.1
>
>
>
>
> zimoun <zimon.toutoune@gmail.com> writes:
> >
> > Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
> > bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 5
> > pacth set like this one are coming...
>
> Thank you, I applied it (last commit is
> bf612ead766ee5afcdccd7c8ab003b791ecea9df).
>
> -- 
> Ricardo
>
>
> --- End Message ---