bug#56036: closed ([PATCH] gnu: Add r-anf.)

[GNU bug Tracking System]

Your message dated Fri, 01 Jul 2022 10:25:14 +0200
with message-id <875ykh8cjr.fsf@elephly.net>
and subject line Re: [bug#56036] [PATCH] gnu: Add r-anf.
has caused the debbugs.gnu.org bug report #56036,
regarding [PATCH] gnu: Add r-anf.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
56036: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56036
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-anf.
>
>
>
>
> Date: 
>
> Fri, 17 Jun 2022 11:53:47 +0200
>
>
>
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..abdca11897 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,34 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-anf
> +  (package
> +    (name "r-anf")
> +    (version "1.18.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "ANF" version))
> +              (sha256
> +               (base32
> +                "1fa2pbdapymrpz01ws0m2fbzf11d723x6rbsys29v06is57f5lpj"))))
> +    (properties `((upstream-name . "ANF")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-biobase
> +           r-igraph
> +           r-mass
> +           r-rcolorbrewer
> +           r-survival))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/ANF";)
> +    (synopsis "Affinity network fusion for complex patient clustering")
> +    (description
> +     "The package @dfn{ANF}(Affinity Network Fusion) provides methods for 
> affinity
> +matrix construction and fusion as well as spectral clustering.  This package is
> +used for complex patient clustering by integrating multi-omic data through 
> affinity
> +network fusion.")
> +    (license license:gpl3)))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#56036] [PATCH] gnu: Add r-anf.
>
>
>
>
> Date: 
>
> Fri, 01 Jul 2022 10:25:14 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.11; emacs 28.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> > index 1e87b190c2..abdca11897 100644
> > --- a/gnu/packages/bioconductor.scm
> > +++ b/gnu/packages/bioconductor.scm
> > @@ -2029,6 +2029,34 @@ (define-public r-aneufinder
> >  sequencing data.")
> >      (license license:artistic2.0)))
> >  
> > +(define-public r-anf
>
> Thanks.  I applied it with a commit message.
>
> -- 
> Ricardo
>
>
> --- End Message ---