bug#56040: closed ([PATCH] gnu: Add r-antiprofiles.)

[GNU bug Tracking System]

Your message dated Fri, 01 Jul 2022 10:25:59 +0200
with message-id <87wncx6xy1.fsf@elephly.net>
and subject line Re: [bug#56040] [PATCH] gnu: Add r-antiprofiles.
has caused the debbugs.gnu.org bug report #56040,
regarding [PATCH] gnu: Add r-antiprofiles.
to be marked as done.

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-- 
56040: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56040
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> --- Begin Message ---
>
>
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> Subject: 
>
> [PATCH] gnu: Add r-antiprofiles.
>
>
>
>
> Date: 
>
> Fri, 17 Jun 2022 16:24:15 +0200
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>
>
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..1eacd863de 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,32 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-antiprofiles
> +  (package
> +    (name "r-antiprofiles")
> +    (version "1.36.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "antiProfiles" version))
> +              (sha256
> +               (base32
> +                "1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40"))))
> +    (properties `((upstream-name . "antiProfiles")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-locfit
> +           r-matrixstats))
> +    (home-page "https://github.com/HCBravoLab/antiProfiles";)
> +    (synopsis "Implementation of gene expression anti-profiles")
> +    (description
> +     "This package implements the gene expression anti-profiles method.
> +Anti-profiles are a new approach for developing cancer genomic signatures that
> +specifically take advantage of gene expression heterogeneity.  They explicitly
> +model increased gene expression variability in cancer to define robust and
> +reproducible gene expression signatures capable of accurately distinguishing
> +tumor samples from healthy controls.")
> +    (license license:artistic2.0)))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: d6bd483cd53cedc8da39fcc6c419f7241080ed21
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#56040] [PATCH] gnu: Add r-antiprofiles.
>
>
>
>
> Date: 
>
> Fri, 01 Jul 2022 10:25:59 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.11; emacs 28.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> > index 1e87b190c2..1eacd863de 100644
> > --- a/gnu/packages/bioconductor.scm
> > +++ b/gnu/packages/bioconductor.scm
> > @@ -2029,6 +2029,32 @@ (define-public r-aneufinder
> >  sequencing data.")
> >      (license license:artistic2.0)))
> >  
> > +(define-public r-antiprofiles
>
> Thanks.  I applied it with a commit message.
>
> -- 
> Ricardo
>
>
> --- End Message ---