bug#56270: closed ([PATCH] gnu: Add r-banocc.)

[GNU bug Tracking System]

Your message dated Thu, 27 Oct 2022 16:02:26 +0200
with message-id <875yg5gy9l.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-banocc.
has caused the debbugs.gnu.org bug report #56270,
regarding [PATCH] gnu: Add r-banocc.
to be marked as done.

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-- 
56270: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56270
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-banocc.
>
>
>
>
> Date: 
>
> Tue, 28 Jun 2022 00:42:13 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-banocc): New variable.
> ---
>  gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
>  1 file changed, 28 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..61ce070559 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,34 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-banocc
> +  (package
> +    (name "r-banocc")
> +    (version "1.20.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "banocc" version))
> +              (sha256
> +               (base32
> +                "10vaggq1w5jkxd8r2k1mhymzvb7x3h8afwn2pvmcpj022ka7xhbx"))))
> +    (properties `((upstream-name . "banocc")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-coda
> +           r-mvtnorm
> +           r-rstan
> +           r-stringr))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/banocc";)
> +    (synopsis "Bayesian analysis of compositional covariance")
> +    (description
> +     "@code{BAnOCC} is a package designed for compositional data, where each
> +sample sums to one.  It infers the approximate covariance of the unconstrained
> +data using a Bayesian model coded with @code{rstan}.  It provides as output the
> +@code{stanfit} object as well as posterior median and credible interval 
> estimates
> +for each correlation element.")
> +    (license license:expat)))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-banocc.
>
>
>
>
> Date: 
>
> Thu, 27 Oct 2022 16:02:26 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied with minor changes.  Thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---