bug#71341: closed ([PATCH] gnu: Add r-topdom.)

[GNU bug Tracking System]

Your message dated Fri, 28 Jun 2024 11:44:01 +0200
with message-id <87pls1wgf2.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-topdom.
has caused the debbugs.gnu.org bug report #71341,
regarding [PATCH] gnu: Add r-topdom.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
71341: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=71341
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-topdom.
>
>
>
>
> Date: 
>
> Mon, 3 Jun 2024 14:47:35 +0000
>
>
>
>
> * gnu/packages/cran.scm (r-topdom): New variable.
>
> Change-Id: I63d265470499affc8f0de94f88739c6631281a0d
> ---
>  gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
>  1 file changed, 24 insertions(+)
>
> diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
> index 16a864be93..b0ccee37bb 100644
> --- a/gnu/packages/cran.scm
> +++ b/gnu/packages/cran.scm
> @@ -31108,6 +31108,30 @@ (define-public r-tolerance
>  Visualizations are also available for most of these settings.")
>      (license license:gpl2+)))
>  
> +(define-public r-topdom
> +  (package
> +    (name "r-topdom")
> +    (version "0.10.1")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (cran-uri "TopDom" version))
> +       (sha256
> +        (base32 "1rryfnwvdlpdrjgs6sciy91cxfp4jykll0swclasydjvj4n642i6"))))
> +    (properties `((upstream-name . "TopDom")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-ggplot2 r-matrixstats r-reshape2 r-tibble))
> +    (home-page "https://github.com/HenrikBengtsson/TopDom";)
> +    (synopsis "Efficient method for Identifying genomic topological domains")
> +    (description
> +     "This method identifies topological domains in genomes from Hi-C sequence 
> data.
> +The authors published an implementation of their method as an R script.  This 
> package
> +originates from those original @code{TopDom} R scripts and provides help pages 
> adopted
> +from the original @code{TopDom} PDF documentation.  It also provides a small 
> number of
> +bug fixes to the original code.")
> +    ;; Either version of the GPL
> +    (license (list license:gpl2 license:gpl3))))
> +
>  ;; Keep this in sync with the liblantern package.
>  (define-public r-torch
>    (package
>
> base-commit: 1615084a9a4115d48b75b3db048761e7534efc87
> prerequisite-patch-id: 191a8394dbe6f865a9dc55bfc1b62e9dffc2180d
> prerequisite-patch-id: 3ddb7b281335b1bb4ced1e60a1f243a12a5cba2b
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-topdom.
>
>
>
>
> Date: 
>
> Fri, 28 Jun 2024 11:44:01 +0200
>
>
>
>
> I've applied it with minor formatting and spelling changes.  Thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---