bug#73497: closed ([PATCH] gnu: Add r-cellchat-v2.)

[GNU bug Tracking System]

Your message dated Fri, 01 Nov 2024 12:26:08 +0100
with message-id <87wmhnjiun.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-cellchat-v2.
has caused the debbugs.gnu.org bug report #73497,
regarding [PATCH] gnu: Add r-cellchat-v2.
to be marked as done.

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-- 
73497: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=73497
GNU Bug Tracking System
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-cellchat-v2.
>
>
>
>
> Date: 
>
> Thu, 26 Sep 2024 10:37:18 +0000
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-cellchat-v2): New variable.
>
> Change-Id: Iae15f373aefa1c2a0899d5271cf8dddbbfdfa2bd
> ---
>  gnu/packages/bioinformatics.scm | 66 +++++++++++++++++++++++++++++++++
>  1 file changed, 66 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index ad7baad590..91cf6a0e2b 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -14315,6 +14315,72 @@ (define-public r-cellchat
>  communication networks from scRNA-seq data.")
>        (license license:gpl3))))
>  
> +(define-public r-cellchat-v2
> +  (let ((commit "b05405af0f4f2cac99f2211e888d42de4c5a9d59")
> +        (revision "1"))
> +    (package
> +      (name "r-cellchat-v2")
> +      (version (git-version "2.1.2" revision commit))
> +      (source
> +       (origin
> +         (method git-fetch)
> +         (uri (git-reference
> +               (url "https://github.com/jinworks/CellChat";)
> +               (commit commit)))
> +         (file-name (git-file-name name version))
> +         (sha256
> +          (base32 "14s7bl70xi21ivqr1c3qx6kjf1ndlyxag880xldqkfsqpksvyvkc"))
> +         (snippet '(for-each delete-file
> +                             '("src/CellChat.so" "src/CellChat_Rcpp.o"
> +                               "src/RcppExports.o")))))
> +      (properties `((upstream-name . "CellChat")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-biocgenerics
> +                               r-biocneighbors
> +                               r-bslib
> +                               r-circlize
> +                               r-colorspace
> +                               r-complexheatmap
> +                               r-cowplot
> +                               r-dplyr
> +                               r-fnn
> +                               r-future
> +                               r-future-apply
> +                               r-ggalluvial
> +                               r-ggnetwork
> +                               r-ggplot2
> +                               r-ggpubr
> +                               r-ggrepel
> +                               r-igraph
> +                               r-irlba
> +                               r-magrittr
> +                               r-matrix
> +                               r-nmf
> +                               r-patchwork
> +                               r-pbapply
> +                               r-plotly
> +                               r-plyr
> +                               r-rcolorbrewer
> +                               r-rcpp
> +                               r-rcppeigen
> +                               r-reshape2
> +                               r-reticulate
> +                               r-rspectra
> +                               r-scales
> +                               r-shape
> +                               r-shiny
> +                               r-sna
> +                               r-stringr
> +                               r-svglite))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/jinworks/CellChat";)
> +      (synopsis
> +       "Inference of cell-cell communication from single-cell and 
> transcriptomics")
> +      (description
> +       "This R tool infers, visualizes, and analyzes cell-cell communication 
> networks.
> +It supports scRNA-seq and spatially resolved transcriptomics data.")
> +      (license license:gpl3))))
> +
>  (define-public r-copykat
>    (let ((commit                         ;no tag
>           "256de33dfc1b80a1a0ac9e098c5557f95a4e0d53")
>
> base-commit: f6715a4715eaed485300dffffa1b5e182ded3cea
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-cellchat-v2.
>
>
>
>
> Date: 
>
> Fri, 01 Nov 2024 12:26:08 +0100
>
>
>
>
> I renamed this to just r-cellchat (same package name), and the variable
> to "r-cellchat-2".
>
> Thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---