bug#74212: closed ([PATCH] gnu: Add r-seuratextend.)

[GNU bug Tracking System]

Your message dated Wed, 06 Nov 2024 11:49:24 +0100
with message-id <871pzok56z.fsf@elephly.net>
and subject line Re: [bug#74212] [PATCH] gnu: Add r-seuratextend.
has caused the debbugs.gnu.org bug report #74212,
regarding [PATCH] gnu: Add r-seuratextend.
to be marked as done.

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-- 
74212: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=74212
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-seuratextend.
>
>
>
>
> Date: 
>
> Tue, 5 Nov 2024 16:49:39 +0000
>
>
>
>
> * gnu/packages/cran.scm (r-seuratextend): New variable.
>
> Change-Id: I9ce0d90a2f05d4e074459046c380849cf9f63978
> ---
>  gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++
>  1 file changed, 47 insertions(+)
>
> diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
> index ab369c116c..b312c30099 100644
> --- a/gnu/packages/cran.scm
> +++ b/gnu/packages/cran.scm
> @@ -38320,6 +38320,53 @@ (define-public r-scattermore
>  data to rasters.  It speeds up plotting of data with millions of points.")
>      (license license:gpl3+)))
>  
> +(define-public r-seuratextend
> +  (let ((commit "5382e921f7b365c7b75b20d07cb455e4390fe36f")
> +        (revision "1"))
> +    (package
> +      (name "r-seuratextend")
> +      (version (git-version "1.0.7" revision commit))
> +      (source
> +       (origin
> +         (method git-fetch)
> +         (uri (git-reference
> +               (url "https://github.com/huayc09/SeuratExtend";)
> +               (commit commit)))
> +         (file-name (git-file-name name version))
> +         (sha256
> +          (base32 "1rlx20jyfdrymxn8b9dsf9n9jk9rwjjx1wy2f00layvd57g9ch2q"))))
> +      (properties `((upstream-name . "SeuratExtend")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-biocmanager
> +                               r-dplyr
> +                               r-ggplot2
> +                               r-ggpubr
> +                               r-glue
> +                               r-hdf5r
> +                               r-magrittr
> +                               r-mosaic
> +                               r-purrr
> +                               r-remotes
> +                               r-reshape2
> +                               r-reticulate
> +                               r-rlist
> +                               r-scales
> +                               r-seurat
> +                               r-seuratextenddata
> +                               r-seuratobject
> +                               r-tidyr))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/huayc09/SeuratExtend";)
> +      (synopsis "Enhanced toolkit for scRNA-seq analysis")
> +      (description
> +       "This package is designed to improve and simplify the analysis of 
> scRNA-seq data.
> +It uses the Seurat object for this purpose.  It provides an array of
> +enhanced visualization tools, an integrated functional and pathway
> +analysis pipeline, seamless integration with popular Python tools,
> +and a suite of utility functions to aid in data manipulation and
> +presentation.")
> +      (license license:gpl3+))))
> +
>  (define-public r-seuratextenddata
>    (let ((commit "e7f17d4bacca436705b06b2cd0c879f83add9271")
>          (revision "1"))
>
> base-commit: 4c56d0cccdc44e12484b26332715f54768738c5f
> prerequisite-patch-id: 8f31c5ea3685b59fb6907a9582c0ca537c9c38bd
> -- 
> 2.43.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#74212] [PATCH] gnu: Add r-seuratextend.
>
>
>
>
> Date: 
>
> Wed, 06 Nov 2024 11:49:24 +0100
>
>
>
>
> Navid Afkhami <navid.afkhami@mdc-berlin.de> writes:
>
> > * gnu/packages/cran.scm (r-seuratextend): New variable.
>
> Thanks for the patch!  I moved the package definition to bioinformatics.
>
> -- 
> Ricardo
>
>
> --- End Message ---