bug#74259: closed ([PATCH] gnu: Add python-harmonypy.)

[GNU bug Tracking System]

Your message dated Mon, 11 Nov 2024 10:53:22 +0100
with message-id <87o72mdrl9.fsf@elephly.net>
and subject line [PATCH] gnu: Add python-harmonypy.
has caused the debbugs.gnu.org bug report #74259,
regarding [PATCH] gnu: Add python-harmonypy.
to be marked as done.

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74259: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=74259
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add python-harmonypy.
>
>
>
>
> Date: 
>
> Fri, 8 Nov 2024 14:48:18 +0000
>
>
>
>
> * gnu/packages/bioinformatics.scm (python-harmonypy): New variable.
>
> Change-Id: Iad8be627099858776163fccfeb27c08129e6fb75
> ---
>  gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
>  1 file changed, 26 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 35ff96ce42..3b393acce2 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -2397,6 +2397,32 @@ (define-public python-doubletdetection
>  from single-cell RNA-sequencing.")
>      (license license:expat)))
>  
> +(define-public python-harmonypy
> +  (package
> +    (name "python-harmonypy")
> +    (version "0.0.10")
> +    (source
> +     (origin
> +       (method git-fetch)
> +       (uri (git-reference
> +             (url "https://github.com/slowkow/harmonypy";)
> +             (commit (string-append "v" version))))
> +       (file-name (git-file-name name version))
> +       (sha256
> +        (base32 "15lxgncrnsx1hapfx78pvx4rjx5d48hqixdnacdy55d84myfmrym"))))
> +    (build-system pyproject-build-system)
> +    (propagated-inputs (list python-hatchling
> +                             python-numpy
> +                             python-pandas
> +                             python-scikit-learn
> +                             python-scipy))
> +    (native-inputs (list python-pytest))
> +    (home-page "https://github.com/slowkow/harmonypy";)
> +    (synopsis "Data integration algorithm")
> +    (description
> +     "Harmony is an algorithm for integrating multiple high-dimensional 
> datasets.")
> +    (license license:gpl2)))
> +
>  (define-public python-hclust2
>    (package
>      (name "python-hclust2")
>
> base-commit: 2a6d96425eea57dc6dd48a2bec16743046e32e06
> prerequisite-patch-id: 8f31c5ea3685b59fb6907a9582c0ca537c9c38bd
> prerequisite-patch-id: e9f28e6ac20c9572b3cc53ab09c4083161bfdf8d
> -- 
> 2.43.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add python-harmonypy.
>
>
>
>
> Date: 
>
> Mon, 11 Nov 2024 10:53:22 +0100
>
>
>
>
> Thanks for the patch.  I moved hatchling to the native inputs because
> it's only needed at build time.  I also extended the description a
> little bit.
>
> -- 
> Ricardo
>
>
> --- End Message ---