[Espressomd-maintainer] [espresso] Split of interaction_data (#18)

[Georg Rempfer]

You can merge this Pull Request by running:

  git pull https://github.com/rempferg/espresso cython_stefan

Or you can view, comment on it, or merge it online at:

  https://github.com/espressomd/espresso/pull/18

-- Commit Summary --

* First Version of Cython Espresso
* adapted make.sh for usage at icp
* mpi seams to be working now!
* major changes:
* Now the last changes appear to be working
* added missing utils.pxd
* makefile more informative
* now it should finally work
* Allow for es.part[i] syntax
* Lennard Jones Interaction
* Updated example
* added shared library for python to autotools system
* added missing file ...
* first version of autotools cython
* re-included the distutils
* Now installation works
* removed obsolete build_lib
* added debye hueckel potential
* corrected small error
* Took out duplicated cython definitions
* Merge branch 'cython' of https://github.com/kessel/espresso into cython
* First attempg to split tcl and core withing integrate
* Merge branch 'cython' of https://github.com/kessel/espresso into cython
* Some fixes.
* Header fix.
* Fixed build system.
* split the tcl part of imd.[ch]
* added parser.h to includes
* split tcl part of random.[ch]
* Merge branch 'cython' of https://github.com/kessel/espresso into cython
* corrected the include-statements
* split up particle_data.[ch]
*       modified:   src/Makefile.am update tcl_interface
* Splitting of core and tcl in cells and statistics
* constraint and iccp3m split interface
* Merge remote branch 'peter/cython' into cython
* Merge remote branch 'pedro_local/cython' into cython
* Split of core/TCL in statistics_chain
* tcl splitting uwerr
* Merge remote branch 'peter/cython' into cython
* removed dependencies of "real espresso" to interface headers
* Merge branch 'cython' of https://github.com/kessel/espresso into cython
* Merge branch 'master' into cython
* Merge branch 'cython' of git://github.com/kessel/espresso into cython
* Merge remote branch 'alex/cython' into cython
* Merge remote branch 'olaf/cython' into cython
* doxygen to take care of tcl_interface
* Merge remote branch 'tobias/cython' into cython
* Merge branch 'cython' of https://github.com/kessel/espresso into cython
* Split global to core and Tcl interface
* small cleanup in virtual sites
* Merge remote branch 'peter/cython' into cython
* split tcl part from maggs code
* Merge branch 'cython' of github.com:kessel/espresso into cython
* tried to remove problems with uwerr
* corrected some missing dependencies, got rid of warnings
* Merge remote branch 'floh/cython' into cython
* fixed a header file dep in global.h
* tcl splitting lb
* Merge branch 'cython' of https://github.com/kessel/espresso into cython
* split up statistics_fluid
* corrected include statement in statistics_tcl.c
* Merge branch 'cython' of https://github.com/kessel/espresso into cython
* Merge branch 'cython' of https://github.com/kessel/espresso into cython
* added the statistics fluid parser files
* corrected Makefile for myconfig-final.h
* Merge remote branch 'floh/cython' into cython
* updated guard for uwerr
* Merge remote branch 'alex/cython' into cython
* Splitted interaction_data.c/h again, this time with Rudolfs changes.

-- File Changes --

M Makefile.am (6)
M config/config.guess (219)
M config/config.sub (156)
M config/install-sh (517)
M configure.ac (6)
A cython/Makefile.am (57)
A cython/debye_hueckel.pxd (15)
A cython/debye_hueckel.pyx (6)
A cython/espresso.pxd (3)
A cython/espresso.pyx (107)
A cython/examples/hello_parallel_world.py (25)
A cython/global_variables.pxd (13)
A cython/global_variables.pyx (38)
A cython/interaction_data.pxd (22)
A cython/interaction_data.pyx (81)
A cython/myconfig.pxd (9)
A cython/particle_data.pxd (46)
A cython/particle_data.pyx (44)
A cython/setup.py (30)
A cython/utils.pxd (8)
M doc/doxygen/Doxyfile (6)
M src/Makefile.am (40)
M src/adresso.c (305)
M src/adresso.h (16)
M src/cells.c (58)
M src/cells.h (4)
M src/config.h (4)
M src/debye_hueckel.h (2)
A src/dummy.c (0)
A src/errexit.c (5)
M src/global.c (30)
M src/global.h (67)
M src/grid.c (102)
M src/grid.h (6)
M src/imd.c (381)
M src/imd.h (20)
M src/initialize.c (12)
M src/integrate.c (242)
M src/integrate.h (23)
M src/interaction_data.c (1054)
M src/interaction_data.h (2)
M src/lb.c (500)
M src/lb.h (7)
M src/lj.h (44)
M src/maggs.c (38)
M src/maggs.h (9)
M src/p3m-dipolar.h (2)
M src/particle_data.c (1773)
M src/particle_data.h (26)
M src/random.c (159)
M src/random.h (9)
M src/statistics.c (2473)
M src/statistics.h (37)
M src/statistics_chain.c (482)
M src/statistics_chain.h (55)
M src/statistics_fluid.c (255)
M src/statistics_fluid.h (9)
A src/tcl_interface/adresso_tcl.c (343)
A src/tcl_interface/adresso_tcl.h (115)
A src/tcl_interface/cells_tcl.c (107)
A src/tcl_interface/cells_tcl.h (79)
A src/tcl_interface/constraint_tcl.c (1002)
A src/tcl_interface/constraint_tcl.h (52)
A src/tcl_interface/global_tcl.c (264)
A src/tcl_interface/global_tcl.h (45)
A src/tcl_interface/grid_tcl.c (138)
A src/tcl_interface/grid_tcl.h (71)
A src/tcl_interface/iccp3m_tcl.c (240)
A src/tcl_interface/iccp3m_tcl.h (102)
A src/tcl_interface/imd_tcl.c (404)
A src/tcl_interface/imd_tcl.h (35)
A src/tcl_interface/integrate_tcl.c (301)
A src/tcl_interface/integrate_tcl.h (67)
A src/tcl_interface/interaction_data_tcl.c (1112)
A src/tcl_interface/interaction_data_tcl.h (42)
A src/tcl_interface/lb_tcl.c (531)
A src/tcl_interface/lb_tcl.h (38)
A src/tcl_interface/maggs_tcl.c (92)
A src/tcl_interface/maggs_tcl.h (73)
A src/tcl_interface/particle_data_tcl.c (1785)
A src/tcl_interface/particle_data_tcl.h (58)
A src/tcl_interface/random_tcl.c (187)
A src/tcl_interface/random_tcl.h (52)
A src/tcl_interface/statistics_chain_tcl.c (484)
A src/tcl_interface/statistics_chain_tcl.h (62)
A src/tcl_interface/statistics_fluid_tcl.c (294)
A src/tcl_interface/statistics_fluid_tcl.h (44)
A src/tcl_interface/statistics_tcl.c (2492)
A src/tcl_interface/statistics_tcl.h (47)
A src/tcl_interface/thermostat_tcl.c (269)
A src/tcl_interface/thermostat_tcl.h (97)
A src/tcl_interface/uwerr_tcl.c (874)
A src/tcl_interface/uwerr_tcl.h (34)
M src/thermostat.c (242)
M src/thermostat.h (4)
M src/uwerr.c (850)
M src/uwerr.h (15)
M src/virtual_sites.c (9)
M src/virtual_sites_relative.c (1)
M src/virtual_sites_relative.h (5)

-- Patch Links --

  https://github.com/espressomd/espresso/pull/18.patch
  https://github.com/espressomd/espresso/pull/18.diff

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Reply to this email directly or view it on GitHub:
https://github.com/espressomd/espresso/pull/18