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[Espressomd-maintainer] Build failed in Jenkins: master-dist #123


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-dist #123
Date: Wed, 7 May 2014 12:07:34 +0200 (CEST)

See <http://espressomd.org/jenkins/job/master-dist/123/changes>

Changes:

[Georg Rempfer] PDB data and scripts for testing.

[Georg Rempfer] Temporary rescaling of pdb lengths, so that I can work with 
agrid=1.

[Georg Rempfer] Proper fix for electrokinetics pdb parser ifdef problem.

[Georg Rempfer] Deleted temporary test scripts.

------------------------------------------
[...truncated 121 lines...]
checking for ld used by mpic++... /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) is GNU 
ld... yes
checking whether the mpic++ linker (/usr/x86_64-suse-linux/bin/ld -m 
elf_x86_64) supports shared libraries... yes
checking for mpic++ option to produce PIC... -fPIC -DPIC
checking if mpic++ PIC flag -fPIC -DPIC works... yes
checking if mpic++ static flag -static works... no
checking if mpic++ supports -c -o file.o... yes
checking if mpic++ supports -c -o file.o... (cached) yes
checking whether the mpic++ linker (/usr/x86_64-suse-linux/bin/ld -m 
elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for gawk... (cached) gawk
checking for egrep... (cached) /usr/bin/grep -E
checking whether ln -s works... yes
checking for doxygen... /usr/bin/doxygen
checking for dot... /usr/bin/dot
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for bibtex... /usr/bin/bibtex
****************************************************************
*               Checking for standard headers                  *
****************************************************************
checking for ANSI C header files... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking sys/file.h usability... yes
checking sys/file.h presence... yes
checking for sys/file.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
****************************************************************
*               Checking for standard functions                *
****************************************************************
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sys/socket.h... (cached) yes
checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking whether to use FFTW... yes
checking for library containing fftw_plan_many_dft... -lfftw3
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
****************************************************************
*                  Checking for Python                         *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/local/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib/python2.7/site-packages
checking whether python -B works... yes
checking whether to build the python interface... no
****************************************************************
*                  Checking for Tcl/Tk                         *
****************************************************************
checking whether to build the Tcl interface... yes
checking for libtcl8.6... no
checking for libtcl8.5... yes
checking for tcl.h... yes
checking whether to use Tk... yes
****************************************************************
*                   Other settings                             *
****************************************************************
checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
****************************************************************
*                   Creating output files                      *
****************************************************************
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-unknown-linux-gnu
package version         = 3.2.0-837-gb7943dd
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O5 
c++ preprocessor flags  = 
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -ltcl8.5 -lcufft -lcudart -lfftw3  -lm
using debug flags       = 
using profiling flags   = 

Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.5
Tk version              = none

Python
------
python                  = /usr/local/bin/python -B
build python interface  = no

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-dist/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-dist/ws/>
+ maintainer/jenkins/dist.sh
7000 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-dist/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-dist/ws/>
  insource=true
START DIST
<http://espressomd.org/jenkins/job/master-dist/ws/> 
<http://espressomd.org/jenkins/job/master-dist/ws/>
>make dist dist-xz
make  dist-xz dist-gzip am__post_remove_distdir='@:'
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/'>
cd .; sh config/genversion.sh -rd > 
<http://espressomd.org/jenkins/job/master-dist/ws/version.txt>
if test -d "espresso-3.2.0-837-gb7943dd"; then find 
"espresso-3.2.0-837-gb7943dd" -type d ! -perm -200 -exec chmod u+w {} ';' && rm 
-rf "espresso-3.2.0-837-gb7943dd" || { sleep 5 && rm -rf 
"espresso-3.2.0-837-gb7943dd"; }; else :; fi
test -d "espresso-3.2.0-837-gb7943dd" || mkdir "espresso-3.2.0-837-gb7943dd"
 (cd config && make  top_distdir=../espresso-3.2.0-837-gb7943dd 
distdir=../espresso-3.2.0-837-gb7943dd/config \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/config'>
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/config'>
 (cd src && make  top_distdir=../espresso-3.2.0-837-gb7943dd 
distdir=../espresso-3.2.0-837-gb7943dd/src \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src'>
  GEN      config-features.cpp
  GEN      config-version.cpp
 (cd tcl && make  top_distdir=../../espresso-3.2.0-837-gb7943dd 
distdir=../../espresso-3.2.0-837-gb7943dd/src/tcl \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/tcl'>
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/tcl'>
 (cd python && make  top_distdir=../../espresso-3.2.0-837-gb7943dd 
distdir=../../espresso-3.2.0-837-gb7943dd/src/python \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/python'>
make[3]: *** No rule to make target `gen_pxiconfig.pyx', needed by `distdir'.  
Stop.
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/python'>
make[2]: *** [distdir] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src'>
make[1]: *** [distdir] Error 1
make[1]: Leaving directory `<http://espressomd.org/jenkins/job/master-dist/ws/'>
make: *** [dist] Error 2
+ exit 1
Build step 'Execute shell' marked build as failure
Archiving artifacts



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