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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multicon
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From: |
Jenkins Demon |
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Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » maxset,nompi #87 |
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Date: |
Mon, 19 May 2014 14:56:28 +0200 (CEST) |
See
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/87/changes>
Changes:
[Stefan Kesselheim] added missing get_interpolated_velocity function
------------------------------------------
[...truncated 172 lines...]
checking for unistd.h... (cached) yes
****************************************************************
* Checking for standard functions *
****************************************************************
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sys/socket.h... (cached) yes
checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
****************************************************************
* Checking for required tools and libraries *
****************************************************************
checking whether to use FFTW... yes
checking for library containing fftw_plan_many_dft... -lfftw3
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
****************************************************************
* Checking for Python *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/local/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory...
${exec_prefix}/lib/python2.7/site-packages
checking whether python -B works... yes
checking whether to build the python interface... no
****************************************************************
* Checking for Tcl/Tk *
****************************************************************
checking whether to build the Tcl interface... yes
checking for libtcl8.6... no
checking for libtcl8.5... yes
checking for tcl.h... yes
checking whether to use Tk... yes
****************************************************************
* Other settings *
****************************************************************
checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8
****************************************************************
* Creating output files *
****************************************************************
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/Makefile
config.status: creating src/python/espresso/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
* Configuration summary *
****************************************************************
platform detected = x86_64-unknown-linux-gnu
package version = 3.2.0-981-g2dafa32
development sources = yes
Compiler
--------
compiler = g++
linker = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags = -Wall -O5
c++ preprocessor flags =
linker flags = -L/usr/local/cuda/lib64
libraries = -ltcl8.5 -lcufft -lcudart -lfftw3 -lm
using debug flags =
using profiling flags =
Libraries
---------
FFTW = yes
efence = no
Cuda
----
CUDA compiler = /usr/local/cuda/bin/nvcc
CUDA flags = --ptxas-options=-v -gencode
arch=compute_20,code=compute_20
Tcl/Tk
------
Tcl version = tcl8.5
Tk version = none
Python
------
python = /usr/local/bin/python -B
build python interface = no
Other settings
--------------
config = myconfig.hpp
installation prefix = /home/jenkins/Espresso
number of test tasks = 8
mympiexec =
mpiexec =
pdflatex = /usr/bin/pdflatex
makeindex = /usr/bin/makeindex
bibtex = /usr/bin/bibtex
doxygen = /usr/bin/doxygen
dot = /usr/bin/dot
WARNING: MPI disabled or not supported! Parallelization turned off.
Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
+ maintainer/jenkins/build.sh
12283 (process ID) old priority 0, new priority 5
srcdir=<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
builddir=<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
insource=true
parallelism=nompi
START BUILD
myconfig=maxset
build_procs=4
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
Copying maxset.hpp to
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/myconfig.hpp...>
>make -j 4
Making all in config
make[1]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/config'>
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/config'>
Making all in src
make[1]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
GEN config-features.hpp
GEN myconfig-final.hpp <= ../myconfig.hpp
GEN config-features.cpp
make all-recursive
make[2]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
Making all in .
make[3]: Entering directory
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
CXX cells.lo
CXX config-features.lo
CXX collision.lo
CXX communication.lo
CXX comfixed.lo
CXX comforce.lo
CXX constraint.lo
CXX cuda_interface.lo
communication.cpp: In function 'void mpi_external_potential_broadcast(int)':
communication.cpp:2929:31: warning: unused variable 'e' [-Wunused-variable]
CXX debug.lo
CXX domain_decomposition.lo
CXX electrokinetics_pdb_parse.lo
CXX energy.lo
CXX external_potential.lo
CXX errorhandling.lo
external_potential.cpp: In function 'int lattice_read_file(Lattice*, char*)':
external_potential.cpp:176:46: warning: deprecated conversion from string
constant to 'char*' [-Wwrite-strings]
CXX fft.lo
CXX fft-common.lo
CXX fft-dipolar.lo
CXX forcecap.lo
CXX forces.lo
CXX galilei.lo
CXX ghosts.lo
CXX global.lo
CXX grid.lo
CXX halo.lo
CXX iccp3m.lo
CXX imd.lo
CXX initialize.lo
CXX integrate.lo
CXX interaction_data.lo
CXX lattice.lo
lattice.cpp: In function 'void lattice_interpolate_linear_gradient(Lattice*,
double*, double*)':
lattice.cpp:151:33: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:156:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:163:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:170:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:177:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:184:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:191:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:198:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:205:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:145:11: warning: unused variable 'w' [-Wunused-variable]
lattice.cpp:145:17: warning: unused variable 'wd' [-Wunused-variable]
lattice.cpp:146:12: warning: unused variable 'temp_index' [-Wunused-variable]
lattice.cpp: In function 'void lattice_interpolate_linear(Lattice*, double*,
double*)':
lattice.cpp:253:31: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:260:33: warning: comparison between signed and unsigned integer
expressions [-Wsign-compare]
lattice.cpp:234:12: warning: unused variable 'temp_index' [-Wunused-variable]
CXX layered.lo
CXX lb.lo
CXX lb-boundaries.lo
lb.cpp: In function 'void lb_prepare_communication()':
lb.cpp:1755:54: error: 'MPI_Type_get_extent' was not declared in this scope
lb.cpp:1758:75: error: 'MPI_Type_create_hvector' was not declared in this scope
make[3]: *** [lb.lo] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE