[Espressomd-maintainer] Build failed in Jenkins: master-build-check #274

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-build-check/274/changes>

Changes:

[Olaf Lenz] Fixes

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[...truncated 62 lines...]
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checking for style of include used by make... GNU
checking whether to compile using MPI... yes
checking for mpic++... mpic++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking dependency style of mpic++... gcc3
checking for function MPI_Init... yes
checking for mpi.h... yes
checking for mpiexec... /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
checking for the mympiexec user script... 
/scratch/jenkins/workspace/master-build-check/mympiexec.sh
checking whether the compiler accepts -O5... yes
checking whether the compiler accepts -Wall... yes
checking whether mpic++ understands -c and -o together... yes
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*                  Checking for programs                       *
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checking how to print strings... printf
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/x86_64-suse-linux/bin/ld
checking if the linker (/usr/x86_64-suse-linux/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-suse-linux-gnu file names to 
x86_64-suse-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-suse-linux-gnu file names to toolchain format... 
func_convert_file_noop
checking for /usr/x86_64-suse-linux/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) 
supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... mpic++ -E
checking for ld used by mpic++... /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) is GNU 
ld... yes
checking whether the mpic++ linker (/usr/x86_64-suse-linux/bin/ld -m 
elf_x86_64) supports shared libraries... yes
checking for mpic++ option to produce PIC... -fPIC -DPIC
checking if mpic++ PIC flag -fPIC -DPIC works... yes
checking if mpic++ static flag -static works... no
checking if mpic++ supports -c -o file.o... yes
checking if mpic++ supports -c -o file.o... (cached) yes
checking whether the mpic++ linker (/usr/x86_64-suse-linux/bin/ld -m 
elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for gawk... (cached) gawk
checking for egrep... (cached) /usr/bin/grep -E
checking whether ln -s works... yes
checking for doxygen... /usr/bin/doxygen
checking for dot... /usr/bin/dot
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for bibtex... /usr/bin/bibtex
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*               Checking for standard headers                  *
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checking for ANSI C header files... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking sys/file.h usability... yes
checking sys/file.h presence... yes
checking for sys/file.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
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*               Checking for standard functions                *
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checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sys/socket.h... (cached) yes
checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
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*         Checking for required tools and libraries            *
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checking whether to use FFTW... yes
checking for library containing fftw_plan_many_dft... -lfftw3
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
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*                  Checking for Python                         *
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checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/local/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib/python2.7/site-packages
checking whether python -B works... yes
checking whether the python interface is wanted... no
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*                  Checking for Tcl/Tk                         *
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checking whether to build the Tcl interface... yes
checking for libtcl8.6... yes
checking for tcl.h... yes
checking whether to use Tk... yes
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*                   Other settings                             *
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checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
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*                   Creating output files                      *
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checking that generated files are newer than configure... done
configure: creating ./config.status
FATAL: hudson.remoting.RequestAbortedException: 
hudson.remoting.Channel$OrderlyShutdown
hudson.remoting.RequestAbortedException: 
hudson.remoting.RequestAbortedException: hudson.remoting.Channel$OrderlyShutdown
        at 
hudson.remoting.RequestAbortedException.wrapForRethrow(RequestAbortedException.java:41)
        at 
hudson.remoting.RequestAbortedException.wrapForRethrow(RequestAbortedException.java:34)
        at hudson.remoting.Request.call(Request.java:174)
        at hudson.remoting.Channel.call(Channel.java:739)
        at 
hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:168)
        at com.sun.proxy.$Proxy62.join(Unknown Source)
        at hudson.Launcher$RemoteLauncher$ProcImpl.join(Launcher.java:956)
        at hudson.tasks.CommandInterpreter.join(CommandInterpreter.java:137)
        at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:97)
        at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:66)
        at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
        at 
hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:756)
        at hudson.model.Build$BuildExecution.build(Build.java:198)
        at hudson.model.Build$BuildExecution.doRun(Build.java:159)
        at 
hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:529)
        at hudson.model.Run.execute(Run.java:1706)
        at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
        at hudson.model.ResourceController.execute(ResourceController.java:88)
        at hudson.model.Executor.run(Executor.java:232)
Caused by: hudson.remoting.RequestAbortedException: 
hudson.remoting.Channel$OrderlyShutdown
        at hudson.remoting.Request.abort(Request.java:299)
        at hudson.remoting.Channel.terminate(Channel.java:802)
        at hudson.remoting.Channel$CloseCommand.execute(Channel.java:951)
        at hudson.remoting.Channel$2.handle(Channel.java:475)
        at 
hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:60)
Caused by: hudson.remoting.Channel$OrderlyShutdown
        ... 3 more
Caused by: Command close created at
        at hudson.remoting.Command.<init>(Command.java:56)
        at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:945)
        at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:943)
        at hudson.remoting.Channel.close(Channel.java:1026)
        at hudson.remoting.Channel.close(Channel.java:1009)
        at hudson.remoting.Channel$CloseCommand.execute(Channel.java:950)
        ... 2 more