[Espressomd-maintainer] Build failed in Jenkins: master-python-interface

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[Espressomd-maintainer] Build failed in Jenkins: master-python-interface

From:	Jenkins Demon
Subject:	[Espressomd-maintainer] Build failed in Jenkins: master-python-interface #286
Date:	Mon, 9 Feb 2015 15:17:15 +0100 (CET)

See <http://espressomd.org/jenkins/job/master-python-interface/286/changes>

Changes:

[kkleinbeck] Bonded Interactions in Python

[kkleinbeck] Bonded Interactions in Python

------------------------------------------
[...truncated 491 lines...]
                     ^
  CXX      lb.lo
  CXX      lb-boundaries.lo
  CXX      lbgpu.lo
  CXX      lees_edwards.lo
  CXX      lees_edwards_domain_decomposition.lo
  CXX      lees_edwards_comms_manager.lo
  CXX      metadynamics.lo
  CXX      minimize_energy.lo
In file included from forces_inline.hpp:55:0,
                 from minimize_energy.hpp:25,
                 from minimize_energy.cpp:24:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
minimize_energy.cpp: In function 'bool steepest_descent_step()':
minimize_energy.cpp:55:16: warning: unused variable 'skin2' [-Wunused-variable]
   const double skin2 = SQR(skin);
                ^
  CXX      modes.lo
  CXX      molforces.lo
  CXX      mol_cut.lo
  CXX      nemd.lo
  CXX      nsquare.lo
In file included from forces_inline.hpp:55:0,
                 from pressure.hpp:32,
                 from nsquare.cpp:33:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
  CXX      particle_data.lo
  CXX      polymer.lo
  CXX      pressure.lo
In file included from forces_inline.hpp:55:0,
                 from pressure.hpp:32,
                 from pressure.cpp:24:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
  CXX      random.lo
  CXX      rattle.lo
  CXX      reaction.lo
  CXX      readpdb.lo
  CXX      rotation.lo
  CXX      RuntimeErrorCollector.lo
  CXX      specfunc.lo
  CXX      statistics.lo
In file included from forces_inline.hpp:55:0,
                 from pressure.hpp:32,
                 from statistics.cpp:36:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
  CXX      statistics_chain.lo
  CXX      statistics_cluster.lo
  CXX      statistics_correlation.lo
  CXX      statistics_fluid.lo
  CXX      statistics_molecule.lo
  CXX      statistics_observable.lo
In file included from forces_inline.hpp:55:0,
                 from pressure.hpp:32,
                 from statistics_observable.cpp:23:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
  CXX      statistics_wallstuff.lo
  CXX      thermostat.lo
  CXX      topology.lo
  CXX      tuning.lo
  CXX      uwerr.lo
  CXX      verlet.lo
In file included from forces_inline.hpp:55:0,
                 from pressure.hpp:32,
                 from verlet.cpp:37:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
  CXX      virtual_sites.lo
In file included from forces_inline.hpp:55:0,
                 from pressure.hpp:32,
                 from virtual_sites.cpp:23:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
  CXX      virtual_sites_com.lo
  CXX      virtual_sites_relative.lo
  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      EspressoSystemInterface.lo
  CXX      PdbParser.lo
  CXX      bmhtf-nacl.lo
  CXX      buckingham.lo
  CXX      dpd.lo
  CXX      gaussian.lo
  CXX      gb.lo
  CXX      hat.lo
  CXX      hertzian.lo
  CXX      lj.lo
  CXX      ljangle.lo
  CXX      ljcos.lo
  CXX      ljcos2.lo
  CXX      ljgen.lo
  CXX      morse.lo
  CXX      soft_sphere.lo
  CXX      steppot.lo
  CXX      tab.lo
  CXX      tunable_slip.lo
  CXX      angle.lo
  CXX      angle_harmonic.lo
  CXX      angle_cosine.lo
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/area_force_local.lo
  CXX      object-in-fluid/area_force_global.lo
In file included from object-in-fluid/area_force_global.cpp:26:0:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
  CXX      object-in-fluid/bending_force.lo
  CXX      object-in-fluid/stretching_force.lo
  CXX      object-in-fluid/stretchlin_force.lo
  CXX      object-in-fluid/volume_force.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
In file included from forces_inline.hpp:55:0,
                 from pressure.hpp:32,
                 from elc.cpp:34:
object-in-fluid/area_force_global.hpp: In function 'void 
calc_area_global(double*, int)':
object-in-fluid/area_force_global.hpp:50:21: warning: unused variable 'norm' 
[-Wunused-variable]
  double partArea=0.,norm[3];
                     ^
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
maggs.cpp: In function 'void maggs_exchange_surface_patch(double*, int, int)':
maggs.cpp:849:5: warning: 'int MPI_Type_hvector(int, int, MPI_Aint, 
MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at 
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded 
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
     MPI_Type_hvector(2,1*sizeof(double),2*sizeof(double), MPI_BYTE, &xz_plaq);
     ^
maggs.cpp:849:77: warning: 'int MPI_Type_hvector(int, int, MPI_Aint, 
MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at 
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded 
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
     MPI_Type_hvector(2,1*sizeof(double),2*sizeof(double), MPI_BYTE, &xz_plaq);
                                                                             ^
maggs.cpp:853:5: warning: 'int MPI_Type_hvector(int, int, MPI_Aint, 
MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at 
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded 
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
     MPI_Type_hvector(surface_patch[2].nblocks, 1, 
dim*surface_patch[2].skip*sizeof(double), oneslice, &xzPlane2D);
     ^
maggs.cpp:853:113: warning: 'int MPI_Type_hvector(int, int, MPI_Aint, 
MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at 
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded 
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
     MPI_Type_hvector(surface_patch[2].nblocks, 1, 
dim*surface_patch[2].skip*sizeof(double), oneslice, &xzPlane2D);
                                                                                
                                 ^
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldgpuForce.lo
  GEN      config-version.cpp
  CXX      config-version.lo
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldgpuForce_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  CXXLD    libEspresso.la
make[4]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
Making all in python/espressomd
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
  GEN      gen_pxiconfig.cpp
Reading definitions from ../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
  CXXLD    gen_pxiconfig
  GEN      myconfig.pxi
make  all-am
make[4]: Entering directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
  CXX      dummy.o
  CXXLD    dummy
  GEN      python-all
  CYTHON   _init.cpp
  CXX      _init.lo
  CXXLD    _init.la
  GEN      _init.so
  CYTHON   _system.cpp
  CXX      _system.lo
  CXXLD    _system.la
  GEN      _system.so
  CYTHON   particle_data.cpp

Error compiling Cython file:
------------------------------------------------------------
...
# GNU General Public License for more details.
#  
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>. 
#  
from _system cimport *
^
------------------------------------------------------------

particle_data.pxd:19:0: '_system.pxd' not found
warning: particle_data.pyx:164:47: local variable 'x' referenced before 
assignment
warning: particle_data.pyx:165:16: local variable 'x' referenced before 
assignment
warning: particle_data.pyx:279:43: local variable 'x' referenced before 
assignment
warning: particle_data.pyx:280:16: local variable 'x' referenced before 
assignment
make[4]: *** [particle_data.cpp] Error 1
make[4]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
make[3]: *** [all] Error 2
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
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