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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-distchec


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-distcheck #181
Date: Sat, 21 Feb 2015 00:52:24 +0100 (CET)

See <http://espressomd.org/jenkins/job/master-nightly-distcheck/181/changes>

Changes:

[Georg Rempfer] Buffered lbforce output.

[Georg Rempfer] Infrastructure for an aritrary number of different stencils in 
EK.

[Georg Rempfer] Separated diffusive from migrative flux calculation in 
ek_calculate_quantities.

[Georg Rempfer] Implemented stencil calculating the migrative flux with node 
centered densities and force forward flux.

[Georg Rempfer] Cleaned up linkcentered flux calculation in EK.

[Georg Rempfer] New EK test case candidate ek_eof_one_species_y.tcl.

[Georg Rempfer] EK slit pore test cases for link centered stencil fixed.

[Georg Rempfer] EK slit pore test cases for nonlinear stencil fixed.

[Georg Rempfer] Now also comparing the bulk components of the LB pressure 
tensor to analytical results. Disabled this check in the 
ek_eof_one_species_y.tcl test case, since the pressure tensor output is broken 
and produces incorrect results with shear in this direction.

[Georg Rempfer] Rempved compiler warning about unused variable.

------------------------------------------
[...truncated 129 lines...]
checking if mpic++ supports -c -o file.o... yes
checking if mpic++ supports -c -o file.o... (cached) yes
checking whether the mpic++ linker (/usr/x86_64-suse-linux/bin/ld -m 
elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for gawk... (cached) gawk
checking for egrep... (cached) /usr/bin/grep -E
checking whether ln -s works... yes
checking for doxygen... /usr/bin/doxygen
checking for dot... /usr/bin/dot
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for bibtex... /usr/bin/bibtex
****************************************************************
*               Checking for standard headers                  *
****************************************************************
checking for ANSI C header files... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking sys/file.h usability... yes
checking sys/file.h presence... yes
checking for sys/file.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
****************************************************************
*               Checking for standard functions                *
****************************************************************
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sys/socket.h... (cached) yes
checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking whether to use FFTW... yes
checking for libfftw3... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
checking whether the compiler accepts -stdlib=libstdc++... no
****************************************************************
*                  Checking for Python                         *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib64/python2.7/site-packages
checking whether python -B works... yes
checking whether the python interface is wanted... no
****************************************************************
*                  Checking for Tcl/Tk                         *
****************************************************************
checking whether to build the Tcl interface... yes
checking for libtcl8.6... yes
checking for tcl.h... yes
checking whether to use Tk... yes
****************************************************************
*                   Other settings                             *
****************************************************************
checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
****************************************************************
*                   Creating output files                      *
****************************************************************
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-478-g3c51a4b
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O3 
c++ preprocessor flags  = 
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -ltcl8.6 -lcufft -lcudart -lfftw3  -lm
using debug flags       = 
using profiling flags   = 

Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/>
+ maintainer/jenkins/distcheck.sh
3607 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/>
  insource=true
  distcheck_flags=
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/> 
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/>
START DISTCHECK
>make distcheck DISTCHECK_CONFIGURE_FLAGS=""
make  dist-xz dist-gzip am__post_remove_distdir='@:'
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/'>
cd .; sh config/genversion.sh -rd > 
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/version.txt>
if test -d "espresso-3.4-dev-478-g3c51a4b"; then find 
"espresso-3.4-dev-478-g3c51a4b" -type d ! -perm -200 -exec chmod u+w {} ';' && 
rm -rf "espresso-3.4-dev-478-g3c51a4b" || { sleep 5 && rm -rf 
"espresso-3.4-dev-478-g3c51a4b"; }; else :; fi
test -d "espresso-3.4-dev-478-g3c51a4b" || mkdir "espresso-3.4-dev-478-g3c51a4b"
 (cd config && make  top_distdir=../espresso-3.4-dev-478-g3c51a4b 
distdir=../espresso-3.4-dev-478-g3c51a4b/config \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/config'>
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/config'>
 (cd src && make  top_distdir=../espresso-3.4-dev-478-g3c51a4b 
distdir=../espresso-3.4-dev-478-g3c51a4b/src \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/src'>
 (cd core && make  top_distdir=../../espresso-3.4-dev-478-g3c51a4b 
distdir=../../espresso-3.4-dev-478-g3c51a4b/src/core \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/src/core'>
  GEN      config-features.cpp
  GEN      config-version.cpp
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/src/core'>
 (cd tcl && make  top_distdir=../../espresso-3.4-dev-478-g3c51a4b 
distdir=../../espresso-3.4-dev-478-g3c51a4b/src/tcl \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/src/tcl'>
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/src/tcl'>
 (cd python/espressomd && make  
top_distdir=../../../espresso-3.4-dev-478-g3c51a4b 
distdir=../../../espresso-3.4-dev-478-g3c51a4b/src/python/espressomd \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/src/python/espressomd'>
make[3]: *** No rule to make target `_tcl.pxd', needed by `distdir'.  Stop.
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/src/python/espressomd'>
make[2]: *** [distdir] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/src'>
make[1]: *** [distdir] Error 1
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/'>
make: *** [dist] Error 2
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts



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