[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » maxset,nompi #223

[Jenkins Demon]

See 
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/223/changes>

Changes:

[Owen Hickey] attempt to fix scaling with agrid in LB

[Christoph Junghans] fix build with cython-0.22

[iva] fixed error messages

[Owen Hickey] agrid scaling in LB appears to be working

[Florian Weik] Make python interface build without LENNARD_JONES.

[Georg Rempfer] Took out incorrect LB force resetting at the beginning of the 
EK integration loop. It caused only part of the lb_force to be applied to the 
fluid.

[Georg Rempfer] Moved EK stencil calculations each into their own device 
function.

[phy79182] Fixed ifdefs so that INTER_DPD compiles also when DPD is not enabled.

[Georg Rempfer] Optimized EK link-centered stencil by performing manual 
subexpression matching. Matching for LB force unit converion is excluded at 
this point, since it makes the code slower.

[Georg Rempfer] Finished optimizing link-centered EK stencil for now. All sub 
expressions containing divisions are explicitely calculated on top. Could store 
them in constant memory in the future.

[Georg Rempfer] Same optimizations for nonlinear stencil.

[Georg Rempfer] Increased error tolerance of engline_lb test cases.

[Florian Weik] Added 2nd charge grid buffer to EK if electrostatics coupling is 
enabled and backup species charge density to it.

[Florian Weik] Kernel for electric field.

[Florian Weik] Interpolate ekin es to particles.

[Florian Weik] Ek es coupling tcl interface.

[Florian Weik] Corrected ifdefs

[Florian Weik] Added testcase for ek coupling."

[Florian Weik] Fix ifdef.

[Florian Weik] Don't reset the particle forces in lb-gpu. (Is done elsewhere)

[Florian Weik] Moved ekin electrostatics coupling force interpolation to long 
range force calculation.

[Florian Weik] Removed unnecessary check on whether charges should be 
comunicated.

[Florian Weik] Correct sign for efield...

[Florian Weik] documentation.

[Florian Weik] Correct type for index calculation.

[Florian Weik] Testcase for ek electrostatic coupling.

[Florian Weik] Revert zero out change.

------------------------------------------
[...truncated 276 lines...]
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-537-ge47fecb
development sources     = yes

Compiler
--------
compiler                = g++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O3 
c++ preprocessor flags  = 
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -ltcl8.6 -lcufft -lcudart -lfftw3  -lm
using debug flags       = 
using profiling flags   = 

Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
mpiexec                 = 
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

WARNING: MPI disabled or not supported! Parallelization turned off.
Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
+ maintainer/jenkins/build.sh
404 (process ID) old priority 0, new priority 5
  
srcdir=<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
  
builddir=<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
  insource=true
  parallelism=nompi
START BUILD
  myconfig=maxset
  build_procs=4
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
 
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/>
Copying maxset.hpp to 
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/myconfig.hpp...>
>make -j 4
Making all in config
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/config'>
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/config'>
Making all in src
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
make  all-recursive
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
Making all in core
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src/core'>
  GEN      myconfig-final.hpp <= ../../myconfig.hpp
  GEN      config-features.hpp
  GEN      config-features.cpp
make  all-am
make[4]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src/core'>
  CXX      cells.lo
  CXX      config-features.lo
  CXX      collision.lo
  CXX      communication.lo
  CXX      comfixed.lo
  CXX      comforce.lo
  CXX      constraint.lo
  CXX      cuda_interface.lo
  CXX      debug.lo
  CXX      domain_decomposition.lo
  CXX      electrokinetics_pdb_parse.lo
  CXX      energy.lo
  CXX      external_potential.lo
  CXX      errorhandling.lo
  CXX      fft.lo
  CXX      fft-common.lo
  CXX      fft-dipolar.lo
  CXX      forcecap.lo
  CXX      forces.lo
  CXX      galilei.lo
  CXX      ghosts.lo
  CXX      global.lo
  CXX      grid.lo
  CXX      halo.lo
  CXX      iccp3m.lo
  CXX      imd.lo
  CXX      initialize.lo
  CXX      integrate.lo
  CXX      interaction_data.lo
  CXX      lattice.lo
  CXX      layered.lo
  CXX      lb.lo
  CXX      lb-boundaries.lo
  CXX      lbgpu.lo
  CXX      lees_edwards.lo
  CXX      lees_edwards_domain_decomposition.lo
  CXX      lees_edwards_comms_manager.lo
  CXX      metadynamics.lo
  CXX      minimize_energy.lo
  CXX      modes.lo
  CXX      molforces.lo
  CXX      mol_cut.lo
  CXX      nemd.lo
  CXX      nsquare.lo
  CXX      particle_data.lo
  CXX      polymer.lo
  CXX      pressure.lo
  CXX      random.lo
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  CXX      reaction.lo
  CXX      readpdb.lo
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  CXX      RuntimeErrorCollector.lo
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  CXX      statistics.lo
  CXX      statistics_chain.lo
  CXX      statistics_cluster.lo
  CXX      statistics_correlation.lo
  CXX      statistics_fluid.lo
  CXX      statistics_molecule.lo
  CXX      statistics_observable.lo
  CXX      statistics_wallstuff.lo
  CXX      thermostat.lo
statistics_observable.cpp: In function 'void 
mpi_observable_lb_radial_velocity_profile_slave_implementation()':
statistics_observable.cpp:633:21: warning: 'pdata.radial_profile_data::rbins' 
is used uninitialized in this function [-Wuninitialized]
   unsigned int n_A=3*pdata.rbins*pdata.phibins*pdata.zbins;
                     ^
statistics_observable.cpp:633:33: warning: 'pdata.radial_profile_data::phibins' 
is used uninitialized in this function [-Wuninitialized]
   unsigned int n_A=3*pdata.rbins*pdata.phibins*pdata.zbins;
                                 ^
statistics_observable.cpp:633:47: warning: 'pdata.radial_profile_data::zbins' 
is used uninitialized in this function [-Wuninitialized]
   unsigned int n_A=3*pdata.rbins*pdata.phibins*pdata.zbins;
                                               ^
  CXX      topology.lo
  CXX      tuning.lo
  CXX      uwerr.lo
  CXX      verlet.lo
  CXX      virtual_sites.lo
  CXX      virtual_sites_com.lo
  CXX      virtual_sites_relative.lo
  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      EspressoSystemInterface.lo
  CXX      PdbParser.lo
  CXX      bmhtf-nacl.lo
  CXX      buckingham.lo
  CXX      dpd.lo
  CXX      gaussian.lo
  CXX      gb.lo
dpd.cpp:46:13: warning: 'bool le_chatterjee_test_pair(Particle*, Particle*)' 
defined but not used [-Wunused-function]
 static bool le_chatterjee_test_pair(Particle *p1, Particle *p2){
             ^
  CXX      hat.lo
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  CXX      lj.lo
  CXX      ljangle.lo
  CXX      ljcos.lo
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  CXX      ljgen.lo
  CXX      morse.lo
  CXX      soft_sphere.lo
  CXX      steppot.lo
  CXX      tab.lo
  CXX      tunable_slip.lo
  CXX      angle.lo
  CXX      angle_harmonic.lo
  CXX      angle_cosine.lo
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
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  CXX      harmonic.lo
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  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
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  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  GEN      config-version.cpp
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
electrokinetics_cuda.cu(2073): error: class "EK_parameters" has no member 
"electric_field"

electrokinetics_cuda.cu(2079): error: class "EK_parameters" has no member 
"electric_field"

electrokinetics_cuda.cu(2085): error: class "EK_parameters" has no member 
"electric_field"

electrokinetics_cuda.cu(2091): error: class "EK_parameters" has no member 
"electric_field"

electrokinetics_cuda.cu(2097): error: class "EK_parameters" has no member 
"electric_field"

electrokinetics_cuda.cu(2103): error: class "EK_parameters" has no member 
"electric_field"

electrokinetics_cuda.cu(2109): error: class "EK_parameters" has no member 
"electric_field"

electrokinetics_cuda.cu(2115): error: class "EK_parameters" has no member 
"electric_field"

8 errors detected in the compilation of 
"/tmp/tmpxft_00000bea_00000000-6_electrokinetics_cuda.cpp1.ii".
make[4]: *** [electrokinetics_cuda.lo] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src/core'>
make[3]: *** [all] Error 2
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src/core'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=maxset,parallelism=nompi/ws/src'>
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE