[Espressomd-maintainer] Build failed in Jenkins: master-nightly-distcheck #195

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-nightly-distcheck/195/changes>

Changes:

[Florian Weik] Still fix build.

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[...truncated 903 lines...]
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-634-g0b26355
development sources     = no

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O3 
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3  
-lm
using debug flags       = 
using profiling flags   = 

Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python
build python interface  = yes
preprocessor flags      = -I/usr/include/python2.7 -I/usr/include/python2.7 
-fno-strict-aliasing -fmessage-length=0 -grecord-gcc-switches -fstack-protector 
-O2 -Wall -D_FORTIFY_SOURCE=2 -funwind-tables -fasynchronous-unwind-tables -g 
-DNDEBUG -fmessage-length=0 -grecord-gcc-switches -fstack-protector -O2 -Wall 
-D_FORTIFY_SOURCE=2 -funwind-tables -fasynchronous-unwind-tables -g 
-DOPENSSL_LOAD_CONF -I/usr/lib64/python2.7/site-packages/numpy/core/include
linker flags            = -lpthread -ldl -lutil -lm -lpython2.7 -Xlinker 
-export-dynamic
extra flags             = -lpthread -ldl -lutil -lm -lpython2.7
extra linker flags      = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = 
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_inst>
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build'>
Making all in config
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/config'>
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/config'>
Making all in src
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/src'>
make  all-recursive
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/src'>
Making all in core
make[4]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/src/core'>
  GEN      myconfig-final.hpp <= ../../../src/core/myconfig-default.hpp
make  all-am
make[5]: Entering directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/src/core'>
  CXX      config-features.lo
  CXX      cells.lo
  CXX      collision.lo
  CXX      communication.lo
  CXX      comfixed.lo
  CXX      comforce.lo
  CXX      constraint.lo
  CXX      cuda_interface.lo
  CXX      cuda_init.lo
  CXX      debug.lo
  CXX      domain_decomposition.lo
  CXX      electrokinetics_pdb_parse.lo
  CXX      energy.lo
  CXX      external_potential.lo
  CXX      errorhandling.lo
  CXX      fft.lo
  CXX      fft-common.lo
  CXX      fft-dipolar.lo
  CXX      forcecap.lo
  CXX      forces.lo
  CXX      galilei.lo
  CXX      ghosts.lo
  CXX      global.lo
  CXX      grid.lo
  CXX      halo.lo
  CXX      iccp3m.lo
  CXX      imd.lo
  CXX      initialize.lo
  CXX      integrate.lo
  CXX      interaction_data.lo
  CXX      lattice.lo
  CXX      layered.lo
  CXX      lb.lo
  CXX      lb-boundaries.lo
  CXX      lbgpu.lo
  CXX      lees_edwards.lo
  CXX      lees_edwards_domain_decomposition.lo
  CXX      lees_edwards_comms_manager.lo
  CXX      metadynamics.lo
  CXX      minimize_energy.lo
  CXX      modes.lo
  CXX      molforces.lo
  CXX      mol_cut.lo
  CXX      nemd.lo
  CXX      nsquare.lo
  CXX      particle_data.lo
  CXX      polymer.lo
  CXX      pressure.lo
  CXX      random.lo
  CXX      rattle.lo
  CXX      reaction.lo
  CXX      readpdb.lo
  CXX      rotation.lo
  CXX      RuntimeErrorCollector.lo
  CXX      specfunc.lo
  CXX      statistics.lo
  CXX      statistics_chain.lo
  CXX      statistics_cluster.lo
  CXX      statistics_correlation.lo
  CXX      statistics_fluid.lo
  CXX      statistics_molecule.lo
  CXX      statistics_observable.lo
  CXX      statistics_wallstuff.lo
  CXX      thermostat.lo
  CXX      topology.lo
  CXX      tuning.lo
  CXX      uwerr.lo
  CXX      verlet.lo
  CXX      virtual_sites.lo
  CXX      virtual_sites_com.lo
  CXX      virtual_sites_relative.lo
  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      integrate_sd.lo
  CXX      EspressoSystemInterface.lo
  CXX      PdbParser.lo
  CXX      bmhtf-nacl.lo
  CXX      buckingham.lo
  CXX      dpd.lo
  CXX      gaussian.lo
  CXX      gb.lo
  CXX      hat.lo
  CXX      hertzian.lo
  CXX      lj.lo
  CXX      ljangle.lo
  CXX      ljcos.lo
  CXX      ljcos2.lo
  CXX      ljgen.lo
  CXX      morse.lo
  CXX      soft_sphere.lo
  CXX      steppot.lo
  CXX      tab.lo
  CXX      tunable_slip.lo
  CXX      angle.lo
  CXX      angle_harmonic.lo
  CXX      angle_cosine.lo
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic_dumbbell.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/area_force_local.lo
  CXX      object-in-fluid/area_force_global.lo
  CXX      object-in-fluid/bending_force.lo
  CXX      object-in-fluid/stretching_force.lo
  CXX      object-in-fluid/stretchlin_force.lo
  CXX      object-in-fluid/volume_force.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
../../../src/core/maggs.cpp: In function 'void 
maggs_exchange_surface_patch(double*, int, int)':
../../../src/core/maggs.cpp:849:5: warning: 'int MPI_Type_hvector(int, int, 
MPI_Aint, MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at 
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded 
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
     MPI_Type_hvector(2,1*sizeof(double),2*sizeof(double), MPI_BYTE, &xz_plaq);
     ^
../../../src/core/maggs.cpp:849:77: warning: 'int MPI_Type_hvector(int, int, 
MPI_Aint, MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at 
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded 
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
     MPI_Type_hvector(2,1*sizeof(double),2*sizeof(double), MPI_BYTE, &xz_plaq);
                                                                             ^
../../../src/core/maggs.cpp:853:5: warning: 'int MPI_Type_hvector(int, int, 
MPI_Aint, MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at 
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded 
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
     MPI_Type_hvector(surface_patch[2].nblocks, 1, 
dim*surface_patch[2].skip*sizeof(double), oneslice, &xzPlane2D);
     ^
../../../src/core/maggs.cpp:853:113: warning: 'int MPI_Type_hvector(int, int, 
MPI_Aint, MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at 
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded 
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
     MPI_Type_hvector(surface_patch[2].nblocks, 1, 
dim*surface_patch[2].skip*sizeof(double), oneslice, &xzPlane2D);
                                                                                
                                 ^
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldgpuForce.lo
  GEN      config-version.cpp
  CXX      config-version.lo
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
In file included from ../../../src/core/integrate_sd_cuda_kernel.cu:9:0:
../../../src/core/integrate_sd_cuda_device.cu:3:40: fatal error: 
integrate_sd_cuda_device.cuh: No such file or directory
 #include "integrate_sd_cuda_device.cuh"
                                        ^
compilation terminated.
In file included from ../../../src/core/integrate_sd_cuda_kernel.cu:9:0:
../../../src/core/integrate_sd_cuda_device.cu:3:40: fatal error: 
integrate_sd_cuda_device.cuh: No such file or directory
 #include "integrate_sd_cuda_device.cuh"
                                        ^
compilation terminated.
make[5]: *** [integrate_sd_cuda_kernel.lo] Error 1
make[5]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/src/core'>
make[4]: *** [all] Error 2
make[4]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/src/core'>
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/src'>
make[2]: *** [all] Error 2
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build/src'>
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-634-g0b26355/_build'>
make: *** [distcheck] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts