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[Espressomd-maintainer] Build failed in Jenkins: master-python-interface
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From: |
Jenkins Demon |
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Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-python-interface #320 |
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Date: |
Tue, 19 May 2015 15:25:54 +0200 (CEST) |
See <http://espressomd.org/jenkins/job/master-python-interface/320/changes>
Changes:
[Florian Weik] Made EspressoSystemInterface a singelton.
------------------------------------------
[...truncated 510 lines...]
CXX dihedral.lo
CXX endangledist.lo
CXX fene.lo
CXX harmonic_dumbbell.lo
CXX harmonic.lo
CXX quartic.lo
CXX overlap.lo
CXX umbrella.lo
CXX bonded_coulomb.lo
CXX subt_lj.lo
CXX object-in-fluid/area_force_local.lo
CXX object-in-fluid/area_force_global.lo
CXX object-in-fluid/bending_force.lo
CXX object-in-fluid/stretching_force.lo
CXX object-in-fluid/stretchlin_force.lo
CXX object-in-fluid/volume_force.lo
CXX hydrogen_bond.lo
CXX twist_stack.lo
CXX immersed_boundary/ibm_main.lo
CXX immersed_boundary/ibm_triel.lo
CXX immersed_boundary/ibm_volume_conservation.lo
CXX immersed_boundary/ibm_tribend.lo
CXX immersed_boundary/ibm_cuda_interface.lo
CXX debye_hueckel.lo
CXX elc.lo
CXX magnetic_non_p3m_methods.lo
CXX mdlc_correction.lo
CXX maggs.lo
maggs.cpp: In function 'void maggs_exchange_surface_patch(double*, int, int)':
maggs.cpp:849:5: warning: 'int MPI_Type_hvector(int, int, MPI_Aint,
MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_hvector(2,1*sizeof(double),2*sizeof(double), MPI_BYTE, &xz_plaq);
^
maggs.cpp:849:77: warning: 'int MPI_Type_hvector(int, int, MPI_Aint,
MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_hvector(2,1*sizeof(double),2*sizeof(double), MPI_BYTE, &xz_plaq);
^
maggs.cpp:853:5: warning: 'int MPI_Type_hvector(int, int, MPI_Aint,
MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_hvector(surface_patch[2].nblocks, 1,
dim*surface_patch[2].skip*sizeof(double), oneslice, &xzPlane2D);
^
maggs.cpp:853:113: warning: 'int MPI_Type_hvector(int, int, MPI_Aint,
MPI_Datatype, ompi_datatype_t**)' is deprecated (declared at
/usr/lib64/mpi/gcc/openmpi/include/mpi.h:1566): MPI_Type_hvector is superseded
by MPI_Type_create_hvector in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_hvector(surface_patch[2].nblocks, 1,
dim*surface_patch[2].skip*sizeof(double), oneslice, &xzPlane2D);
^
CXX mmm1d.lo
CXX mmm2d.lo
CXX mmm-common.lo
CXX p3m.lo
CXX p3m-common.lo
CXX p3m-dipolar.lo
CXX reaction_field.lo
CXX actor/ActorList.lo
CXX actor/HarmonicWell.lo
CXX actor/HarmonicOrientationWell.lo
CXX actor/Mmm1dgpuForce.lo
CXX actor/EwaldgpuForce.lo
GEN config-version.cpp
CXX config-version.lo
NVCC cuda_init_cuda.lo
NVCC cuda_common_cuda.lo
NVCC electrokinetics_cuda.lo
NVCC fd-electrostatics_cuda.lo
NVCC lbgpu_cuda.lo
NVCC p3m_gpu_cuda.lo
NVCC EspressoSystemInterface_cuda.lo
NVCC integrate_sd_cuda.lo
NVCC integrate_sd_cuda_kernel.lo
NVCC integrate_sd_cuda_debug.lo
NVCC integrate_sd_matrix.lo
NVCC integrate_sd_cuda_device.lo
NVCC actor/Mmm1dgpuForce_cuda.lo
NVCC actor/EwaldgpuForce_cuda.lo
NVCC actor/HarmonicWell_cuda.lo
NVCC actor/HarmonicOrientationWell_cuda.lo
NVCC immersed_boundary/ibm_cuda.lo
CXXLD libEspresso.la
make[4]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
Making all in python/espressomd
make[3]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
GEN gen_pxiconfig.cpp
Reading definitions from ../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
CXXLD gen_pxiconfig
GEN myconfig.pxi
make all-am
make[4]: Entering directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
CXX dummy.o
CXXLD dummy
GEN python-all
CYTHON _init.cpp
CXX _init.lo
CXXLD _init.la
GEN _init.so
CYTHON _system.cpp
CXX _system.lo
CXXLD _system.la
GEN _system.so
CYTHON particle_data.cpp
warning: particle_data.pyx:164:47: local variable 'x' referenced before
assignment
warning: particle_data.pyx:165:16: local variable 'x' referenced before
assignment
warning: particle_data.pyx:279:43: local variable 'x' referenced before
assignment
warning: particle_data.pyx:280:16: local variable 'x' referenced before
assignment
CXX particle_data.lo
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from particle_data.cpp:250:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by " "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from particle_data.cpp:250:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1:
warning: 'int _import_array()' defined but not used [-Wunused-function]
_import_array(void)
^
In file included from
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from particle_data.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1:
warning: 'int _import_umath()' defined but not used [-Wunused-function]
_import_umath(void)
^
CXXLD particle_data.la
GEN particle_data.so
CYTHON analyze.cpp
Error compiling Cython file:
------------------------------------------------------------
...
#
# Pressure analysis
#
def pressure(self, pressure_type = 'all', id1 = 'default', id2 = 'default',
v_comp=False):
cdef vector[string] pressure_labels
^
------------------------------------------------------------
analyze.pyx:129:7: 'vector' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
#
# Pressure analysis
#
def pressure(self, pressure_type = 'all', id1 = 'default', id2 = 'default',
v_comp=False):
cdef vector[string] pressure_labels
cdef vector[double] pressures
^
------------------------------------------------------------
analyze.pyx:130:7: 'vector' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
checkTypeOrExcept(id2, 1, int, "id2 must be an int")
pressure = c_analyze.analyze_pressure_pair(pressure_type, id1, id2, v_comp)
return pressure
def stress_tensor(self, stress_type = 'all', id1 = 'default', id2 = 'default',
v_comp=False):
cdef vector[string] stress_labels
^
------------------------------------------------------------
analyze.pyx:151:7: 'vector' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
pressure = c_analyze.analyze_pressure_pair(pressure_type, id1, id2, v_comp)
return pressure
def stress_tensor(self, stress_type = 'all', id1 = 'default', id2 = 'default',
v_comp=False):
cdef vector[string] stress_labels
cdef vector[double] stresses
^
------------------------------------------------------------
analyze.pyx:152:7: 'vector' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
c_pos[i] = pos[i]
il = <IntList*> malloc(sizeof(IntList))
c_analyze.nbhood(c_pos, r_catch, il, planedims)
result = create_nparray_from_IntList(il)
^
------------------------------------------------------------
analyze.pyx:120:38: undeclared name not builtin: create_nparray_from_IntList
Error compiling Cython file:
------------------------------------------------------------
...
c_pos[i] = pos[i]
il = <IntList*> malloc(sizeof(IntList))
c_analyze.nbhood(c_pos, r_catch, il, planedims)
result = create_nparray_from_IntList(il)
^
------------------------------------------------------------
analyze.pyx:120:41: Cannot convert 'IntList *' to Python object
Error compiling Cython file:
------------------------------------------------------------
...
c_range_start[i]=range_start[i]
c_stress_range[i]=stress_range[i]
if c_analyze.analyze_local_stress_tensor(c_periodicity, c_range_start,
c_stress_range, c_bins, local_stress_tensor):
raise Exception("Error while calculating local stress tensor")
stress_tensor = create_nparray_from_DoubleList(local_stress_tensor)
^
------------------------------------------------------------
analyze.pyx:188:49: undeclared name not builtin: create_nparray_from_DoubleList
Error compiling Cython file:
------------------------------------------------------------
...
c_range_start[i]=range_start[i]
c_stress_range[i]=stress_range[i]
if c_analyze.analyze_local_stress_tensor(c_periodicity, c_range_start,
c_stress_range, c_bins, local_stress_tensor):
raise Exception("Error while calculating local stress tensor")
stress_tensor = create_nparray_from_DoubleList(local_stress_tensor)
^
------------------------------------------------------------
analyze.pyx:188:69: Cannot convert 'DoubleList *' to Python object
make[4]: *** [analyze.cpp] Error 1
make[4]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
make[3]: *** [all] Error 2
make[3]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make[1]: *** [all] Error 2
make[1]: Leaving directory
`<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts