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[Espressomd-maintainer] Build failed in Jenkins: master-dist #362


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-dist #362
Date: Thu, 28 May 2015 00:34:44 +0200 (CEST)

See <http://espressomd.org/jenkins/job/master-dist/362/changes>

Changes:

[devrtz] Removed Bond IDs

[devrtz] Deleted some shit that got pasted by accident

[devrtz] Documented usage of bonded interactions in python interface

[devrtz] Deleted unnecessary function getID() that was put in for testing 
purposes.

------------------------------------------
[...truncated 149 lines...]
*               Checking for standard headers                  *
****************************************************************
checking for ANSI C header files... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking sys/file.h usability... yes
checking sys/file.h presence... yes
checking for sys/file.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
****************************************************************
*               Checking for standard functions                *
****************************************************************
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sys/socket.h... (cached) yes
checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking whether to use FFTW... yes
checking for libfftw3... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking for libcublas... yes
checking for cublas_v2.h... yes
checking for libcurand... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
checking whether the compiler accepts -stdlib=libstdc++... no
checking whether to use MAGMA... guess
checking for library containing magma_init... no
configure: WARNING: MAGMA not found. Some features will not be available!
checking whether to use ARPACK... guess
checking for libarpack... no
configure: WARNING: could not find ARPACK library. Some features will not be 
available!
configure: WARNING: ARPACK not found. Some features will not be available!
****************************************************************
*                  Checking for Python                         *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib64/python2.7/site-packages
checking whether python -B works... yes
checking whether the python interface is wanted... no
****************************************************************
*                  Checking for Tcl/Tk                         *
****************************************************************
checking whether to build the Tcl interface... yes
checking for libtcl8.6... yes
checking for tcl.h... yes
checking whether to use Tk... yes
****************************************************************
*                          h5md                                *
****************************************************************
checking whether to build with h5md support... yes
checking for libhdf5... yes
checking for hdf5.h... yes
****************************************************************
*                   Other settings                             *
****************************************************************
checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
****************************************************************
*                   Creating output files                      *
****************************************************************
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-888-ge5736ab
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      = -Wall -O3 
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart 
-lfftw3  -lm
using debug flags       = 
using profiling flags   = 

Libraries
---------
FFTW                    = yes
efence                  = no

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-dist/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
END CONFIGURE
<http://espressomd.org/jenkins/job/master-dist/ws/>
+ maintainer/jenkins/dist.sh
17754 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-dist/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-dist/ws/>
  insource=true
START DIST
<http://espressomd.org/jenkins/job/master-dist/ws/> 
<http://espressomd.org/jenkins/job/master-dist/ws/>
>make dist dist-xz
make  dist-xz dist-gzip am__post_remove_distdir='@:'
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/'>
cd .; sh config/genversion.sh -rd > 
<http://espressomd.org/jenkins/job/master-dist/ws/version.txt>
if test -d "espresso-3.4-dev-888-ge5736ab"; then find 
"espresso-3.4-dev-888-ge5736ab" -type d ! -perm -200 -exec chmod u+w {} ';' && 
rm -rf "espresso-3.4-dev-888-ge5736ab" || { sleep 5 && rm -rf 
"espresso-3.4-dev-888-ge5736ab"; }; else :; fi
test -d "espresso-3.4-dev-888-ge5736ab" || mkdir "espresso-3.4-dev-888-ge5736ab"
 (cd config && make  top_distdir=../espresso-3.4-dev-888-ge5736ab 
distdir=../espresso-3.4-dev-888-ge5736ab/config \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/config'>
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/config'>
 (cd src && make  top_distdir=../espresso-3.4-dev-888-ge5736ab 
distdir=../espresso-3.4-dev-888-ge5736ab/src \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src'>
 (cd core && make  top_distdir=../../espresso-3.4-dev-888-ge5736ab 
distdir=../../espresso-3.4-dev-888-ge5736ab/src/core \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/core'>
  GEN      config-features.cpp
  GEN      config-version.cpp
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/core'>
 (cd tcl && make  top_distdir=../../espresso-3.4-dev-888-ge5736ab 
distdir=../../espresso-3.4-dev-888-ge5736ab/src/tcl \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/tcl'>
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/tcl'>
 (cd python/espressomd && make  
top_distdir=../../../espresso-3.4-dev-888-ge5736ab 
distdir=../../../espresso-3.4-dev-888-ge5736ab/src/python/espressomd \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/python/espressomd'>
make[3]: *** No rule to make target `actors.pxd', needed by `distdir'.  Stop.
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src/python/espressomd'>
make[2]: *** [distdir] Error 1
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/master-dist/ws/src'>
make[1]: *** [distdir] Error 1
make[1]: Leaving directory `<http://espressomd.org/jenkins/job/master-dist/ws/'>
make: *** [dist] Error 2
+ exit 1
Build step 'Execute shell' marked build as failure
Archiving artifacts



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