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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #48


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #48
Date: Fri, 29 May 2015 02:27:22 +0200 (CEST)

See <http://espressomd.org/jenkins/job/master-nightly-mac/48/changes>

Changes:

[kai] Indentation and documentation for Angle_Cosine

------------------------------------------
[...truncated 12 lines...]
START CONFIGURE
  configure_params=
  configure_vars=
  with_cuda=false
  with_mpi=false
  with_fftw=true
  with_tcl=true
  with_python_interface=false
~/workspace/workspace/master-nightly-mac 
~/workspace/workspace/master-nightly-mac
Not using CUDA => generating mock 
<http://espressomd.org/jenkins/job/master-nightly-mac/ws/src/cuda.h...>
><http://espressomd.org/jenkins/job/master-nightly-mac/ws/configure> 
>--without-python-interface --with-tcl --with-fftw --without-cuda --without-mpi 
>--enable-silent-rules   NVCC=/bin/false
checking build system type... x86_64-apple-darwin14.3.0
checking host system type... x86_64-apple-darwin14.3.0
checking target system type... x86_64-apple-darwin14.3.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
<http://espressomd.org/jenkins/job/master-nightly-mac/ws/config/missing>: 
Unknown '--is-lightweight' option
Try '<http://espressomd.org/jenkins/job/master-nightly-mac/ws/config/missing> 
--help' for more information
configure: WARNING: 'missing' script is too old or missing
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '502' is supported by ustar format... yes
checking whether GID '20' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether make supports nested variables... (cached) yes
checking whether we are using development sources... yes
****************************************************************
*      Checking compiler characteristics and MPI support       *
****************************************************************
checking for style of include used by make... GNU
checking whether to compile using MPI... no
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking dependency style of g++... gcc3
configure: WARNING: No MPI c++ compiler found, will use fake implementation!
checking whether g++ can get a pretty function name... __PRETTY_FUNCTION__
checking whether the compiler accepts -O3... yes
checking whether the compiler accepts -Wall... yes
checking whether g++ understands -c and -o together... yes
****************************************************************
*                  Checking for programs                       *
****************************************************************
checking how to print strings... printf
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker 
(/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-apple-darwin14.3.0 file names to 
x86_64-apple-darwin14.3.0 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin14.3.0 file names to toolchain 
format... func_convert_file_noop
checking for 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
 option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker 
(/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 supports shared libraries... yes
checking dynamic linker characteristics... darwin14.3.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker 
(/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 is GNU ld... no
checking whether the g++ linker 
(/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common -DPIC
checking if g++ PIC flag -fno-common -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker 
(/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
 supports shared libraries... yes
checking dynamic linker characteristics... darwin14.3.0 dyld
checking how to hardcode library paths into programs... immediate
checking for gawk... (cached) awk
checking for egrep... (cached) /usr/bin/grep -E
checking whether ln -s works... yes
checking for doxygen... no
checking for dot... no
checking for pdflatex... no
checking for makeindex... no
checking for bibtex... no
****************************************************************
*               Checking for standard headers                  *
****************************************************************
checking for ANSI C header files... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking sys/file.h usability... yes
checking sys/file.h presence... yes
checking for sys/file.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
****************************************************************
*               Checking for standard functions                *
****************************************************************
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sys/socket.h... (cached) yes
checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking whether to use FFTW... yes
checking for libfftw3... yes
checking for fftw3.h... yes
checking whether to use CUDA... no
checking for nvcc... /bin/false
checking whether to use MAGMA... guess
checking for library containing magma_init... no
configure: WARNING: MAGMA not found. Some features will not be available!
checking whether to use ARPACK... guess
checking for libarpack... no
configure: WARNING: could not find ARPACK library. Some features will not be 
available!
configure: WARNING: ARPACK not found. Some features will not be available!
****************************************************************
*                  Checking for Python                         *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... darwin
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib/python2.7/site-packages
checking whether python -B works... yes
checking whether the python interface is wanted... no
****************************************************************
*                  Checking for Tcl/Tk                         *
****************************************************************
checking whether to build the Tcl interface... yes
checking for libtcl8.6... yes
checking for tcl.h... yes
checking whether to use Tk... yes
****************************************************************
*                          h5md                                *
****************************************************************
checking whether to build with h5md support... yes
checking for libhdf5... no
configure: error: in 
`<http://espressomd.org/jenkins/job/master-nightly-mac/ws/'>:
configure: error: could not link against the hdf5 library
See `config.log' for more details
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts



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