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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #59
From: |
Jenkins Demon |
Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #59 |
Date: |
Tue, 14 Jul 2015 02:28:15 +0200 (CEST) |
See <http://espressomd.org/jenkins/job/master-nightly-mac/59/changes>
Changes:
[Joost de Graaf] testing LD thermostat
[Joost de Graaf] fixed translational Langevin thermostat
[Joost de Graaf] Fixed Langevin Thermostat for MASS and ROTATIONAL_INERTIA with
non-unit values
[Joost de Graaf] Fixed testcase
[Joost de Graaf] Added warning to the Langevin thermostat initialization and
put description in the UG.
------------------------------------------
[...truncated 331 lines...]
Other settings
--------------
config = myconfig.hpp
installation prefix = /Users/jenkins/Espresso
number of test tasks = 4
mympiexec =
mpiexec =
pdflatex = no
makeindex = no
bibtex = no
doxygen = no
dot = no
CUDA disabled or not supported.
WARNING: MPI disabled or not supported! Parallelization turned off.
Not building Python interface.
END CONFIGURE
~/workspace/workspace/master-nightly-mac
+ maintainer/jenkins/build.sh
srcdir=<http://espressomd.org/jenkins/job/master-nightly-mac/ws/>
builddir=<http://espressomd.org/jenkins/job/master-nightly-mac/ws/>
insource=true
START BUILD
myconfig=maxset
build_procs=4
~/workspace/workspace/master-nightly-mac
~/workspace/workspace/master-nightly-mac
Copying maxset.hpp to
<http://espressomd.org/jenkins/job/master-nightly-mac/ws/myconfig.hpp...>
>make -j 4
Making all in config
make[1]: Nothing to be done for `all'.
Making all in src
/Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive
Making all in core
GEN config-features.hpp
GEN myconfig-final.hpp <= ../../myconfig.hpp
GEN config-features.cpp
/Applications/Xcode.app/Contents/Developer/usr/bin/make all-am
CXX config-features.lo
CXX cells.lo
CXX collision.lo
CXX communication.lo
CXX comfixed.lo
CXX comforce.lo
CXX constraint.lo
CXX cuda_interface.lo
CXX cuda_init.lo
CXX debug.lo
CXX domain_decomposition.lo
CXX electrokinetics_pdb_parse.lo
CXX energy.lo
CXX external_potential.lo
CXX errorhandling.lo
CXX fft.lo
CXX fft-common.lo
CXX fft-dipolar.lo
CXX forcecap.lo
CXX forces.lo
CXX galilei.lo
CXX ghosts.lo
CXX global.lo
CXX grid.lo
CXX halo.lo
CXX iccp3m.lo
CXX imd.lo
CXX initialize.lo
CXX integrate.lo
CXX interaction_data.lo
CXX lattice.lo
CXX layered.lo
CXX lb.lo
CXX lb-boundaries.lo
CXX lbgpu.lo
CXX lees_edwards.lo
CXX lees_edwards_domain_decomposition.lo
CXX lees_edwards_comms_manager.lo
CXX metadynamics.lo
CXX minimize_energy.lo
CXX modes.lo
CXX molforces.lo
CXX mol_cut.lo
CXX nemd.lo
CXX nsquare.lo
CXX particle_data.lo
CXX polymer.lo
CXX pressure.lo
CXX random.lo
CXX rattle.lo
CXX reaction.lo
CXX readpdb.lo
CXX rotation.lo
CXX RuntimeErrorCollector.lo
CXX specfunc.lo
CXX statistics.lo
CXX statistics_chain.lo
CXX statistics_cluster.lo
CXX statistics_correlation.lo
CXX statistics_fluid.lo
CXX statistics_molecule.lo
CXX statistics_observable.lo
CXX statistics_wallstuff.lo
CXX thermostat.lo
CXX topology.lo
statistics_observable.cpp:576:9: warning: unused variable 'pdata_'
[-Wunused-variable]
void* pdata_ = self->container;
^
statistics_observable.cpp:577:16: warning: unused variable 'n_A'
[-Wunused-variable]
unsigned int n_A = self->n;
^
CXX tuning.lo
CXX uwerr.lo
CXX verlet.lo
CXX virtual_sites.lo
2 warnings generated.
CXX virtual_sites_com.lo
CXX virtual_sites_relative.lo
CXX vmdsock.lo
CXX ghmc.lo
CXX integrate_sd.lo
CXX EspressoSystemInterface.lo
CXX PdbParser.lo
CXX bmhtf-nacl.lo
CXX buckingham.lo
CXX cos2.lo
CXX dpd.lo
CXX gaussian.lo
CXX gb.lo
CXX hat.lo
CXX hertzian.lo
CXX lj.lo
CXX ljangle.lo
CXX ljcos.lo
CXX ljcos2.lo
CXX ljgen.lo
CXX morse.lo
CXX soft_sphere.lo
CXX steppot.lo
CXX tab.lo
CXX tunable_slip.lo
CXX angle.lo
CXX angle_harmonic.lo
CXX angle_cosine.lo
CXX angle_cossquare.lo
CXX angledist.lo
CXX dihedral.lo
CXX endangledist.lo
CXX fene.lo
CXX harmonic_dumbbell.lo
CXX harmonic.lo
CXX quartic.lo
CXX overlap.lo
CXX umbrella.lo
CXX bonded_coulomb.lo
CXX subt_lj.lo
CXX hydrogen_bond.lo
CXX twist_stack.lo
CXX debye_hueckel.lo
CXX elc.lo
CXX magnetic_non_p3m_methods.lo
CXX mdlc_correction.lo
CXX maggs.lo
CXX mmm1d.lo
CXX mmm2d.lo
CXX mmm-common.lo
CXX p3m.lo
CXX p3m-common.lo
CXX p3m-dipolar.lo
CXX reaction_field.lo
GEN config-version.cpp
CXX object-in-fluid/area_force_local.lo
CXX object-in-fluid/area_force_global.lo
CXX object-in-fluid/bending_force.lo
CXX object-in-fluid/stretching_force.lo
CXX object-in-fluid/stretchlin_force.lo
CXX object-in-fluid/volume_force.lo
CXX immersed_boundary/ibm_main.lo
CXX immersed_boundary/ibm_triel.lo
CXX immersed_boundary/ibm_volume_conservation.lo
CXX immersed_boundary/ibm_tribend.lo
CXX immersed_boundary/ibm_cuda_interface.lo
CXX actor/ActorList.lo
CXX actor/HarmonicWell.lo
CXX actor/HarmonicOrientationWell.lo
CXX actor/Mmm1dgpuForce.lo
CXX actor/EwaldgpuForce.lo
CXX config-version.lo
CXX mpifake/mpi.lo
CXXLD libEspresso.la
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(cuda_interface.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(cuda_init.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(electrokinetics_pdb_parse.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(lbgpu.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(lees_edwards_domain_decomposition.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(lees_edwards_comms_manager.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(metadynamics.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(mol_cut.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(virtual_sites_com.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(cos2.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(tunable_slip.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(angle.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(umbrella.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_main.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_triel.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_volume_conservation.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_tribend.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_cuda_interface.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(HarmonicWell.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(HarmonicOrientationWell.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(Mmm1dgpuForce.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(EwaldgpuForce.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(cuda_interface.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(cuda_init.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(electrokinetics_pdb_parse.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(lbgpu.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(lees_edwards_domain_decomposition.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(lees_edwards_comms_manager.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(metadynamics.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(mol_cut.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(virtual_sites_com.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(cos2.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(tunable_slip.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(angle.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(umbrella.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_main.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_triel.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_volume_conservation.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_tribend.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(ibm_cuda_interface.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(HarmonicWell.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(HarmonicOrientationWell.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(Mmm1dgpuForce.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
file: .libs/libEspresso.a(EwaldgpuForce.o) has no symbols
Making all in tcl
CXX bin_tcl.lo
CXX binary_file_tcl.lo
CXX blockfile_tcl.lo
CXX h5mdfile_tcl.lo
h5mdfile_tcl.cpp:13:10: fatal error: 'hdf5.h' file not found
#include "hdf5.h"
^
1 error generated.
make[3]: *** [h5mdfile_tcl.lo] Error 1
make[3]: *** Waiting for unfinished jobs....
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #54, Jenkins Demon, 2015/07/02
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #55, Jenkins Demon, 2015/07/03
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #56, Jenkins Demon, 2015/07/07
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #57, Jenkins Demon, 2015/07/09
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #58, Jenkins Demon, 2015/07/10
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #59,
Jenkins Demon <=
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #60, Jenkins Demon, 2015/07/17
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #61, Jenkins Demon, 2015/07/20
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #62, Jenkins Demon, 2015/07/21
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #63, Jenkins Demon, 2015/07/23
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #64, Jenkins Demon, 2015/07/27
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #65, Jenkins Demon, 2015/07/29
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #66, Jenkins Demon, 2015/07/30
- [Espressomd-maintainer] Build failed in Jenkins: master-nightly-mac #67, Jenkins Demon, 2015/07/31
- [Espressomd-maintainer] Jenkins build is back to normal : master-nightly-mac #68, Jenkins Demon, 2015/07/31