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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-debug #3


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-debug #301
Date: Wed, 16 Mar 2016 04:06:44 +0100 (CET)

See <http://espressomd.org/jenkins/job/master-nightly-debug/301/changes>

Changes:

[phy79182] cleaned lb python interface, added sample script

[phy79182] lb tests give different results than an equivalent tcl script

[phy79182] cleaning and naming convention

[phy79182] edited sample script

------------------------------------------
[...truncated 284 lines...]
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/00-building_espresso/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/tutorials/04-lattice_boltzmann/Makefile
config.status: creating doc/tutorials/05-raspberry_electrophoresis/Makefile
config.status: creating doc/tutorials/06-active_matter/Makefile
config.status: creating doc/tutorials/07-electrokinetics/Makefile
config.status: creating doc/tutorials/08-visualization/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-1939-g0b153e0
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      =  -std=c++11
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart 
-lfftw3  -lm -ldl
using debug flags       = 
using profiling flags   = 

cython complier         = 
cython preproc flags    = 


Libraries
---------
FFTW                    = yes
efence                  = no
h5md                    = yes
boost_test              = yes

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  -O3 -std c++11 --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /group/icp/texlive/bin/x86_64-linux/pdflatex
makeindex               = /group/icp/texlive/bin/x86_64-linux/makeindex
bibtex                  = /group/icp/texlive/bin/x86_64-linux/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
****************************************************************
* DEPRECATION WARNING: The autoconf/autotools build system     *
* will be replaced by cmake in the future.                     *
* New features are only available via cmake.                   *
****************************************************************
END CONFIGURE
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
+ maintainer/jenkins/build.sh
18842 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
  insource=true
START BUILD
  myconfig=nocheck-maxset
  build_procs=4
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/> 
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/>
Copying nocheck-maxset.hpp to 
<http://espressomd.org/jenkins/job/master-nightly-debug/ws/myconfig.hpp...>
>make -j 4 
Making all in config
make[1]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/config'>
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/config'>
Making all in src
make[1]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
make  all-recursive
make[2]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
Making all in core
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
  GEN      myconfig-final.hpp <= ../../myconfig.hpp
  GEN      config-features.hpp
  GEN      config-features.cpp
make  all-recursive
make[4]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
Making all in unit_tests
make[5]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core/unit_tests'>
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core/unit_tests'>
make[5]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
  CXX      config-features.lo
  CXX      cells.lo
  CXX      collision.lo
  CXX      communication.lo
  CXX      comfixed.lo
  CXX      comforce.lo
  CXX      constraint.lo
  CXX      cuda_interface.lo
  CXX      cuda_init.lo
  CXX      debug.lo
  CXX      domain_decomposition.lo
  CXX      electrokinetics_pdb_parse.lo
  CXX      energy.lo
  CXX      external_potential.lo
  CXX      errorhandling.lo
  CXX      fft.lo
  CXX      fft-common.lo
  CXX      fft-dipolar.lo
  CXX      forcecap.lo
  CXX      forces.lo
  CXX      galilei.lo
  CXX      ghosts.lo
  CXX      global.lo
  CXX      grid.lo
  CXX      halo.lo
  CXX      iccp3m.lo
  CXX      imd.lo
  CXX      initialize.lo
  CXX      integrate.lo
  CXX      interaction_data.lo
  CXX      lattice.lo
  CXX      layered.lo
  CXX      lb.lo
  CXX      lb-boundaries.lo
  CXX      lbgpu.lo
  CXX      lees_edwards.lo
  CXX      lees_edwards_domain_decomposition.lo
  CXX      lees_edwards_comms_manager.lo
  CXX      metadynamics.lo
  CXX      minimize_energy.lo
  CXX      modes.lo
  CXX      molforces.lo
  CXX      mol_cut.lo
  CXX      nemd.lo
  CXX      npt.lo
  CXX      nsquare.lo
  CXX      particle_data.lo
  CXX      polymer.lo
  CXX      polynom.lo
  CXX      pressure.lo
  CXX      random.lo
  CXX      rattle.lo
  CXX      reaction.lo
  CXX      readpdb.lo
  CXX      Ringbuffer.lo
  CXX      rotate_system.lo
  CXX      rotation.lo
  CXX      RuntimeErrorCollector.lo
  CXX      RuntimeErrorStream.lo
  CXX      scafacos.lo
  CXX      specfunc.lo
  CXX      statistics.lo
  CXX      statistics_chain.lo
  CXX      statistics_cluster.lo
  CXX      statistics_correlation.lo
  CXX      statistics_fluid.lo
  CXX      statistics_molecule.lo
  CXX      statistics_observable.lo
  CXX      statistics_wallstuff.lo
  CXX      thermostat.lo
  CXX      topology.lo
  CXX      tuning.lo
  CXX      utils.lo
  CXX      uwerr.lo
  CXX      verlet.lo
  CXX      virtual_sites.lo
  CXX      virtual_sites_com.lo
  CXX      virtual_sites_relative.lo
  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      Vector.lo
  CXX      SystemInterface.lo
  CXX      integrate_sd.lo
  CXX      EspressoSystemInterface.lo
  CXX      PdbParser.lo
  CXX      bmhtf-nacl.lo
  CXX      buckingham.lo
  CXX      cos2.lo
  CXX      dpd.lo
  CXX      gaussian.lo
  CXX      gb.lo
  CXX      hat.lo
  CXX      hertzian.lo
  CXX      lj.lo
  CXX      ljangle.lo
  CXX      ljcos.lo
  CXX      ljcos2.lo
  CXX      ljgen.lo
  CXX      morse.lo
  CXX      soft_sphere.lo
In file included from utils.hpp:35:0,
                 from lj.hpp:30,
                 from ljgen.cpp:36:
ljgen.cpp: In function 'void calc_ljgen_cap_radii()':
ljgen.cpp:115:67: error: 'force' was not declared in this scope
                             this_node,i,j,params->LJGEN_capradius,force,cnt));
                                                                   ^
debug.hpp:131:28: note: in definition of macro 'FORCE_TRACE'
 #define FORCE_TRACE(cmd) { cmd;  }
                            ^
Makefile:1142: recipe for target 'ljgen.lo' failed
make[5]: *** [ljgen.lo] Error 1
make[5]: *** Waiting for unfinished jobs....
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
Makefile:1167: recipe for target 'all-recursive' failed
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
Makefile:815: recipe for target 'all' failed
make[3]: *** [all] Error 2
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src/core'>
Makefile:449: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
Makefile:387: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-debug/ws/src'>
Makefile:475: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts



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