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[Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-comp
From: |
Jenkins Demon |
Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-compile » immersed_boundaries #43 |
Date: |
Mon, 2 May 2016 16:24:54 +0200 (CEST) |
See
<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=immersed_boundaries/43/changes>
Changes:
[Florian Weik] random: Reimplementet state gathering.
[Florian Weik] random: Reimplementet state gathering.
[Florian Weik] random:...
[Florian Weik] random: State can now be checkpointed again.
[Florian Weik] maintainer: NEWS
[Florian Weik] travis: Added boost mpi.
[Florian Weik] random: Fix const issue.
[Florian Weik] testsuite: Made langevin_per_particle test deterministic. This
time for
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[...truncated 516 lines...]
CXX angle_cossquare.lo
CXX angledist.lo
CXX dihedral.lo
CXX endangledist.lo
CXX fene.lo
CXX harmonic_dumbbell.lo
CXX harmonic.lo
CXX quartic.lo
CXX overlap.lo
CXX umbrella.lo
CXX bonded_coulomb.lo
CXX subt_lj.lo
CXX object-in-fluid/oif_global_forces.lo
CXX object-in-fluid/oif_local_forces.lo
CXX object-in-fluid/out_direction.lo
CXX hydrogen_bond.lo
CXX twist_stack.lo
CXX debye_hueckel.lo
CXX elc.lo
CXX magnetic_non_p3m_methods.lo
CXX mdlc_correction.lo
CXX maggs.lo
CXX mmm1d.lo
CXX mmm2d.lo
CXX mmm-common.lo
CXX p3m.lo
CXX p3m-common.lo
CXX p3m-dipolar.lo
CXX reaction_field.lo
GEN config-version.cpp
NVCC cuda_init_cuda.lo
NVCC cuda_common_cuda.lo
NVCC electrokinetics_cuda.lo
NVCC fd-electrostatics_cuda.lo
NVCC lbgpu_cuda.lo
NVCC p3m_gpu_cuda.lo
NVCC EspressoSystemInterface_cuda.lo
NVCC integrate_sd_cuda.lo
NVCC integrate_sd_cuda_kernel.lo
NVCC integrate_sd_cuda_debug.lo
NVCC integrate_sd_matrix.lo
NVCC integrate_sd_cuda_device.lo
NVCC actor/Mmm1dgpuForce_cuda.lo
NVCC actor/EwaldGPU_cuda.lo
NVCC actor/HarmonicWell_cuda.lo
NVCC immersed_boundary/ibm_cuda.lo
NVCC actor/DipolarDirectSum_cuda.lo
NVCC actor/HarmonicOrientationWell_cuda.lo
NVCC p3m_gpu_error_cuda.lo
CXX utils/statistics/RunningAverage.lo
CXX object-in-fluid/affinity.lo
CXX object-in-fluid/membrane_collision.lo
CXX immersed_boundary/ibm_main.lo
CXX immersed_boundary/ibm_triel.lo
CXX immersed_boundary/ibm_volume_conservation.lo
CXX immersed_boundary/ibm_tribend.lo
CXX immersed_boundary/ibm_cuda_interface.lo
CXX actor/ActorList.lo
CXX actor/HarmonicWell.lo
CXX actor/HarmonicOrientationWell.lo
CXX actor/Mmm1dgpuForce.lo
CXX actor/EwaldGPU.lo
CXX actor/DipolarDirectSum.lo
CXX config-version.lo
CXXLD libEspresso.la
make[5]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=immersed_boundaries/ws/src/core'>
make[4]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=immersed_boundaries/ws/src/core'>
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=immersed_boundaries/ws/src/core'>
Making all in tcl
make[3]: Entering directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=immersed_boundaries/ws/src/tcl'>
CXX bin_tcl.lo
CXX binary_file_tcl.lo
CXX blockfile_tcl.lo
CXX h5mdfile_tcl.lo
CXX rotate_system_tcl.lo
CXX readpdb_tcl.lo
CXX cells_tcl.lo
CXX channels_tcl.lo
CXX collision_tcl.lo
CXX comfixed_tcl.lo
CXX comforce_tcl.lo
CXX config_tcl.lo
CXX constraint_tcl.lo
CXX domain_decomposition_tcl.lo
CXX electrokinetics_tcl.lo
CXX external_potential_tcl.lo
CXX energy_tcl.lo
CXX galilei_tcl.lo
CXX global_tcl.lo
CXX grid_tcl.lo
CXX iccp3m_tcl.lo
CXX imd_tcl.lo
CXX initialize_interpreter.lo
CXX integrate_tcl.lo
CXX interaction_data_tcl.lo
CXX lb-boundaries_tcl.lo
CXX lb_tcl.lo
CXX lees_edwards_tcl.lo
CXX metadynamics_tcl.lo
CXX nemd_tcl.lo
CXX mol_cut_tcl.lo
CXX parser.lo
CXX particle_data_tcl.lo
CXX polymer_tcl.lo
CXX pressure_tcl.lo
CXX random_tcl.lo
CXX reaction_tcl.lo
CXX rattle_tcl.lo
CXX statistics_chain_tcl.lo
CXX statistics_cluster_tcl.lo
CXX statistics_correlation_tcl.lo
CXX statistics_fluid_tcl.lo
CXX statistics_observable_tcl.lo
CXX statistics_wallstuff_tcl.lo
CXX statistics_tcl.lo
CXX thermostat_tcl.lo
CXX topology_tcl.lo
CXX tuning_tcl.lo
CXX uwerr_tcl.lo
CXX virtual_sites_com_tcl.lo
CXX ghmc_tcl.lo
CXX twist_stack_tcl.lo
CXX hydrogen_bond_tcl.lo
CXX minimize_energy_tcl.lo
CXX integrate_sd_tcl.lo
CXX mpiio_tcl.lo
CXX bmhtf-nacl_tcl.lo
CXX buckingham_tcl.lo
CXX cos2_tcl.lo
CXX dpd_tcl.lo
CXX forcecap_tcl.lo
CXX gaussian_tcl.lo
CXX gb_tcl.lo
CXX hat_tcl.lo
CXX hertzian_tcl.lo
CXX lj_tcl.lo
CXX ljangle_tcl.lo
CXX ljcos2_tcl.lo
CXX ljcos_tcl.lo
CXX ljgen_tcl.lo
CXX morse_tcl.lo
CXX soft_sphere_tcl.lo
CXX steppot_tcl.lo
CXX tab_tcl.lo
CXX tunable_slip_tcl.lo
CXX angle_tcl.lo
CXX angle_harmonic_tcl.lo
CXX angle_cosine_tcl.lo
CXX angle_cossquare_tcl.lo
CXX angledist_tcl.lo
CXX dihedral_tcl.lo
CXX endangledist_tcl.lo
CXX fene_tcl.lo
CXX harmonic_dumbbell_tcl.lo
CXX harmonic_tcl.lo
CXX quartic_tcl.lo
CXX bonded_coulomb_tcl.lo
CXX overlap_tcl.lo
CXX subt_lj_tcl.lo
CXX umbrella_tcl.lo
CXX object-in-fluid/oif_global_forces_tcl.lo
CXX object-in-fluid/oif_local_forces_tcl.lo
CXX object-in-fluid/out_direction_tcl.lo
CXX debye_hueckel_tcl.lo
CXX elc_tcl.lo
CXX magnetic_non_p3m_methods_tcl.lo
CXX maggs_tcl.lo
CXX mmm1d_tcl.lo
CXX mmm2d_tcl.lo
CXX p3m-dipolar_tcl.lo
CXX p3m_tcl.lo
CXX reaction_field_tcl.lo
CXX mdlc_correction_tcl.lo
CXX cuda_init_tcl.lo
CXX Espresso_install-scriptsdir.o
CXX Espresso_install-main.o
NVCC cuda_workaround.o
CXX Espresso-scriptsdir.o
CXX Espresso-main.o
CXX object-in-fluid/affinity_tcl.lo
CXX object-in-fluid/membrane_collision_tcl.lo
CXX immersed_boundary/ibm_triel_tcl.lo
CXX immersed_boundary/ibm_volume_conservation_tcl.lo
CXX immersed_boundary/ibm_tribend_tcl.lo
CXX actor/Mmm1dgpu_tcl.lo
CXX actor/Ewaldgpu_tcl.lo
CXX actor/DipolarDirectSum_tcl.lo
CXX actor/HarmonicWell_tcl.lo
CXX actor/HarmonicOrientationWell_tcl.lo
CXXLD libEspressoTcl.la
CXXLD Espresso.install
CXXLD Espresso
../core/.libs/libEspresso.so: .undefined reference to.
`/boost:core:mpi/:.:libscommunicator/::libEspresso.socommunicator:(
ompi_communicator_tundefined* constreference& , toboost
:`:boostmpi::::comm_create_kindmpi):'
:..communicator/:core/:.communicatorlibs(/libEspresso.soompi_communicator_t:*
undefinedconst reference& ,to
`boostboost::::archivempi::::detail:comm_create_kind:)basic_iarchive'::
basic_iarchive.(.unsigned/ intcore)/'
..libs.//core/libEspresso.so.:libs/ libEspresso.soundefined: undefined
referencereference toto
``boost:boost::mpi::archive:communicator::::operatordetail
:ompi_communicator_t:*(basic_iarchive) :const:'
basic_iarchive.(.unsigned/ core/int.)libs'/
libEspresso.so.:. /undefinedcore reference/ .tolibs
`/boostlibEspresso.so:::archive :undefined: detail:reference:
shared_ptr_helper:to: shared_ptr_helper`(boost)':
:..mpi/:core:/.communicatorlibs:/:libEspresso.so:operator undefined
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:.:.detail/::coreshared_ptr_helper/::.~libsshared_ptr_helper/()libEspresso.so':
. ./undefinedcore /.referencelibs /tolibEspresso.so :` boostundefined
:reference: archiveto:
`:boostdetail:::mpi:::shared_ptr_helperexception::::exception(shared_ptr_helperchar(
)const'*
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.core.//core/..libslibs//libEspresso.solibEspresso.so:: undefined
undefinedreference toreference ` vtableto for`
boostboost::::mpiarchive::::exception'detail
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to .`.typeinfo/ forcore /boost:.:libsarchive/::libEspresso.sodetail::
:undefinedbasic_iarchive'
reference.. /tocore /`.libsboost/libEspresso.so::: undefinedmpi :reference:
toexception :`:boost:exception:(mpichar:: communicatorconst::*communicator,()
'int
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core./..libs//libEspresso.socore:/ undefined. libsreference /to
libEspresso.so`boost:: :mpiundefined: :exceptionreference: :~toexception
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. .for/ core/boost.:libs:/mpilibEspresso.so:: :undefined exceptionreference'
to .`.boost:/:corempi:/:.exceptionlibs::/~exceptionlibEspresso.so(:) '
undefined. ./referencecore /to. libs/`libEspresso.sotypeinfo: undefinedfor
reference boostto:
:`boostarchive::::archivedetail:::detail:::basic_iarchivebasic_oarchive:':
basic_oarchive(.unsigned. /intcore)'/
..libs.//core/libEspresso.so.libs:/ libEspresso.so:undefined
undefinedreference referenceto to
``boostboost:::archive:::mpidetail::::basic_oarchive:communicator::end_preamble(:)'communicator
.(.)/core'/
.libs./.libEspresso.so/: coreundefined/ .referencelibs /to libEspresso.so`:void
boost:undefined: mpi:reference: communicatorto:
:`send<boostboost::::mpimpi::::packed_oarchive>exception(:int:, ~intexception,
(boost)::'mpi
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./.libEspresso.so/:core /.undefinedlibs/ libEspresso.soreference: undefinedto
reference `toboost `:boost:::mpimpi::::status
exceptionboost::::mpi~::exceptioncommunicator:(:)recv'<
boost.:.:/mpi:core:/packed_iarchive>.(libsint,/ intlibEspresso.so,:
boost::undefinedmpi ::referencepacked_iarchive &to) `constboost'
:.:.archive/:core/:.libsdetail/libEspresso.so::: undefinedbasic_oarchive
:reference :tobasic_oarchive `(typeinfounsigned for intboost:):'mpi
:.:.exception/'
core./../libscore//.libslibEspresso.so/:libEspresso.so: undefinedundefined
referencereference to to`
boost:`:boostarchive::::detailarchive:::basic_iarchive:::detail~:basic_iarchive(:)'basic_oarchive
:.:./end_preamblecore(/).'libs
/libEspresso.so.:. /undefinedcore /reference .tolibs `/typeinfolibEspresso.so
:for boostundefined: :referencearchive :to: detail:`:voidbasic_oarchive'
boost..:/:core/mpi.:libs/:libEspresso.socommunicator:: :undefined sendreference
<to
boost`:boost::mpi:archive::::detailpacked_oarchive::>basic_oarchive(::int~,basic_oarchive
()int',
boost::mpi::packed_oarchive const&) const'
../core/.libs/libEspresso.so: undefined reference to `boost::mpi::status
boost::mpi::communicator::recv<boost::mpi::packed_iarchive>(int, int,
boostcollect2: error: ld returned 1 exit status
::mpi::packed_iarchive&) const'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for
boost::mpi::exception'
../core/.libs/libEspresso.so: undefined reference to
`boost::archive::detail::basic_iarchive::~basic_iarchive()'
../core/.libs/libEspresso.so: undefined reference to `typeinfo for
boost::archive::detail::basic_oarchive'
../core/.libs/libEspresso.so: undefined reference to
`boost::archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
Makefile:884: recipe for target 'Espresso' failed
make[3]: *** [Espresso] Error 1
make[3]: *** Waiting for unfinished jobs....
Makefile:888: recipe for target 'Espresso.install' failed
make[3]: *** [Espresso.install] Error 1
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=immersed_boundaries/ws/src/tcl'>
Makefile:449: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=immersed_boundaries/ws/src'>
Makefile:387: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory
'<http://espressomd.org/jenkins/job/master-multiconfig-compile/myconfig=immersed_boundaries/ws/src'>
Makefile:475: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
- [Espressomd-maintainer] Build failed in Jenkins: master-multiconfig-compile » immersed_boundaries #43,
Jenkins Demon <=