[Espressomd-maintainer] Build failed in Jenkins: master-python-interface #523

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-python-interface/523/changes>

Changes:

[Florian Weik] random: Reimplementet state gathering.

[Florian Weik] random: Reimplementet state gathering.

[Florian Weik] random:...

[Florian Weik] random: State can now be checkpointed again.

[Florian Weik] maintainer: NEWS

[Florian Weik] travis: Added boost mpi.

[Florian Weik] random: Fix const issue.

[Florian Weik] testsuite: Made langevin_per_particle test deterministic. This 
time for

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  build_procs=1
<http://espressomd.org/jenkins/job/master-python-interface/ws/> 
<http://espressomd.org/jenkins/job/master-python-interface/ws/>
Using default myconfig.
>make -j 1 
Making all in config
make[1]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/config'>
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/config'>
Making all in src
make[1]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
make  all-recursive
make[2]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
Making all in core
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
  GEN      myconfig-final.hpp <= ./myconfig-default.hpp
  GEN      config-features.hpp
make  all-recursive
make[4]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
Making all in unit_tests
make[5]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core/unit_tests'>
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory 
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make[5]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
  CXX      config-features.lo
  CXX      cells.lo
  CXX      collision.lo
  CXX      communication.lo
  CXX      comfixed.lo
  CXX      comforce.lo
  CXX      constraint.lo
  CXX      cuda_interface.lo
  CXX      cuda_init.lo
  CXX      debug.lo
  CXX      domain_decomposition.lo
  CXX      electrokinetics_pdb_parse.lo
  CXX      energy.lo
  CXX      external_potential.lo
  CXX      errorhandling.lo
  CXX      fft.lo
  CXX      fft-common.lo
  CXX      fft-dipolar.lo
  CXX      forcecap.lo
  CXX      forces.lo
  CXX      galilei.lo
  CXX      ghosts.lo
  CXX      global.lo
  CXX      grid.lo
  CXX      halo.lo
  CXX      iccp3m.lo
  CXX      imd.lo
  CXX      initialize.lo
  CXX      integrate.lo
  CXX      interaction_data.lo
  CXX      lattice.lo
  CXX      layered.lo
  CXX      lb.lo
  CXX      lb-boundaries.lo
  CXX      lbgpu.lo
  CXX      lees_edwards.lo
  CXX      lees_edwards_domain_decomposition.lo
  CXX      lees_edwards_comms_manager.lo
  CXX      metadynamics.lo
  CXX      minimize_energy.lo
  CXX      modes.lo
  CXX      molforces.lo
  CXX      mol_cut.lo
  CXX      nemd.lo
  CXX      npt.lo
  CXX      nsquare.lo
  CXX      particle_data.lo
  CXX      polymer.lo
  CXX      polynom.lo
  CXX      pressure.lo
  CXX      random.lo
  CXX      rattle.lo
  CXX      reaction.lo
  CXX      readpdb.lo
  CXX      Ringbuffer.lo
  CXX      rotate_system.lo
  CXX      rotation.lo
  CXX      RuntimeErrorCollector.lo
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  CXX      scafacos.lo
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  CXX      statistics.lo
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  CXX      statistics_correlation.lo
  CXX      statistics_fluid.lo
  CXX      statistics_molecule.lo
  CXX      statistics_observable.lo
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  CXX      thermostat.lo
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  CXX      tuning.lo
  CXX      utils.lo
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  CXX      virtual_sites.lo
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  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      Vector.lo
  CXX      SystemInterface.lo
  CXX      integrate_sd.lo
  CXX      EspressoSystemInterface.lo
  CXX      PdbParser.lo
  CXX      utils/statistics/RunningAverage.lo
  CXX      mpiio.lo
  CXX      bmhtf-nacl.lo
  CXX      buckingham.lo
  CXX      cos2.lo
  CXX      dpd.lo
  CXX      gaussian.lo
  CXX      gb.lo
  CXX      hat.lo
  CXX      hertzian.lo
  CXX      lj.lo
  CXX      ljangle.lo
  CXX      ljcos.lo
  CXX      ljcos2.lo
  CXX      ljgen.lo
  CXX      morse.lo
  CXX      soft_sphere.lo
  CXX      object-in-fluid/affinity.lo
  CXX      object-in-fluid/membrane_collision.lo
  CXX      steppot.lo
  CXX      tab.lo
  CXX      tunable_slip.lo
  CXX      angle.lo
  CXX      angle_harmonic.lo
  CXX      angle_cosine.lo
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic_dumbbell.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      umbrella.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/oif_global_forces.lo
  CXX      object-in-fluid/oif_local_forces.lo
  CXX      object-in-fluid/out_direction.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldGPU.lo
  CXX      actor/DipolarDirectSum.lo
  GEN      config-version.cpp
  CXX      config-version.lo
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldGPU_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  NVCC     actor/DipolarDirectSum_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     p3m_gpu_error_cuda.lo
  CXXLD    libEspresso.la
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/core'>
Making all in python/espressomd
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
  GEN      gen_pxiconfig.cpp
Reading definitions from ../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
  CXXLD    gen_pxiconfig
  GEN      myconfig.pxi
make  all-am
make[4]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
  CXX      dummy.o
  CXXLD    dummy
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::communicator(ompi_communicator_t* const&, 
boost::mpi::comm_create_kind)'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_iarchive::basic_iarchive(unsigned int)'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::operator ompi_communicator_t*() const'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::shared_ptr_helper::shared_ptr_helper()'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::shared_ptr_helper::~shared_ptr_helper()'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::exception::exception(char const*, int)'
../../../src/core/.libs/libEspresso.so: undefined reference to `vtable for 
boost::mpi::exception'
../../../src/core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::archive::detail::basic_iarchive'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::communicator::communicator()'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::exception::~exception()'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::exception::~exception()'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_oarchive::basic_oarchive(unsigned int)'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_oarchive::end_preamble()'
../../../src/core/.libs/libEspresso.so: undefined reference to `void 
boost::mpi::communicator::send<boost::mpi::packed_oarchive>(int, int, 
boost::mpi::packed_oarchive const&) const'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::mpi::status 
boost::mpi::communicator::recv<boost::mpi::packed_iarchive>(int, int, 
boost::mpi::packed_iarchive&) const'
../../../src/core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::mpi::exception'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_iarchive::~basic_iarchive()'
../../../src/core/.libs/libEspresso.so: undefined reference to `typeinfo for 
boost::archive::detail::basic_oarchive'
../../../src/core/.libs/libEspresso.so: undefined reference to 
`boost::archive::detail::basic_oarchive::~basic_oarchive()'
collect2: error: ld returned 1 exit status
Makefile:491: recipe for target 'dummy' failed
make[4]: *** [dummy] Error 1
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
Makefile:446: recipe for target 'all' failed
make[3]: *** [all] Error 2
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
Makefile:449: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
Makefile:387: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src'>
Makefile:475: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts