[Espressomd-maintainer] Build failed in Jenkins: master-nightly-distcheck #329

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-nightly-distcheck/329/changes>

Changes:

[kai] Updated h5md.tcl for automatic file naming.

[kai] Removed automatic flush of h5 file due to performance issues.

------------------------------------------
[...truncated 2257 lines...]
ln -s ../../../testsuite/tcl/lb_fluid_coupling_gpu.tcl .
ln -s ../../../testsuite/tcl/lb_fluid_coupling.tcl .
ln -s ../../../testsuite/tcl/lb_gpu.tcl .
ln -s ../../../testsuite/tcl/lb_planar_embedded_particles_gpu.tcl .
ln -s ../../../testsuite/tcl/lb_planar_embedded_particles.tcl .
ln -s ../../../testsuite/tcl/lb_planar_gpu.tcl .
ln -s ../../../testsuite/tcl/lb_planar.tcl .
ln -s ../../../testsuite/tcl/lb_stokes_sphere_gpu.tcl .
ln -s ../../../testsuite/tcl/lb_stokes_sphere.tcl .
ln -s ../../../testsuite/tcl/lb_system.data .
ln -s ../../../testsuite/tcl/lb.tcl .
ln -s ../../../testsuite/tcl/lees_edwards.tcl .
ln -s ../../../testsuite/tcl/lj1.tab .
ln -s ../../../testsuite/tcl/lj2.tab .
ln -s ../../../testsuite/tcl/lj3.tab .
ln -s ../../../testsuite/tcl/lj-cos_system.data .
ln -s ../../../testsuite/tcl/lj-cos.tcl .
ln -s ../../../testsuite/tcl/lj-generic.tcl .
ln -s ../../../testsuite/tcl/lj_system.data .
ln -s ../../../testsuite/tcl/lj.tcl .
ln -s ../../../testsuite/tcl/madelung.tcl .
ln -s ../../../testsuite/tcl/maggs_correct_rdf.data .
ln -s ../../../testsuite/tcl/maggs.tcl .
ln -s ../../../testsuite/tcl/magnetic-field.tcl .
ln -s ../../../testsuite/tcl/Makefile.am .
ln -s ../../../testsuite/tcl/Makefile.in .
ln -s ../../../testsuite/tcl/mass-and-rinertia_per_particle.tcl .
ln -s ../../../testsuite/tcl/mass-and-rinertia.tcl .
ln -s ../../../testsuite/tcl/mass_system.data .
ln -s ../../../testsuite/tcl/mass.tcl .
ln -s ../../../testsuite/tcl/mdlc_expected_energy.data .
ln -s ../../../testsuite/tcl/mdlc_expected_force_torque.data .
ln -s ../../../testsuite/tcl/mdlc_system.data .
ln -s ../../../testsuite/tcl/mdlc.tcl .
ln -s ../../../testsuite/tcl/minimize_energy_rotation.tcl .
ln -s ../../../testsuite/tcl/minimize_energy.tcl .
ln -s ../../../testsuite/tcl/mmm1dgpu.tcl .
ln -s ../../../testsuite/tcl/mmm1d_system.data .
ln -s ../../../testsuite/tcl/mmm1d.tcl .
ln -s ../../../testsuite/tcl/npt_lj_system.data .
ln -s ../../../testsuite/tcl/npt.tcl .
ln -s ../../../testsuite/tcl/nsquare.tcl .
ln -s ../../../testsuite/tcl/nve_pe.tcl .
ln -s ../../../testsuite/tcl/object_in_fluid_gpu.tcl .
ln -s ../../../testsuite/tcl/object_in_fluid_system-final.data .
ln -s ../../../testsuite/tcl/object_in_fluid_system-init.data .
ln -s ../../../testsuite/tcl/object_in_fluid_system-nodes.data .
ln -s ../../../testsuite/tcl/object_in_fluid_system-triangles.data .
ln -s ../../../testsuite/tcl/object_in_fluid.tcl .
ln -s ../../../testsuite/tcl/observable.tcl .
ln -s ../../../testsuite/tcl/p3m_gpu_simple_noncubic.tcl .
ln -s ../../../testsuite/tcl/p3m_gpu.tcl .
ln -s ../../../testsuite/tcl/p3m_magnetostatics2_expected.data .
ln -s ../../../testsuite/tcl/p3m_magnetostatics2_system.data .
ln -s ../../../testsuite/tcl/p3m_magnetostatics2.tcl .
ln -s ../../../testsuite/tcl/p3m_magnetostatics.data .
ln -s ../../../testsuite/tcl/p3m_magnetostatics.tcl .
ln -s ../../../testsuite/tcl/p3m_simple_noncubic.tcl .
ln -s ../../../testsuite/tcl/p3m_system.data .
ln -s ../../../testsuite/tcl/p3m_system_gpu.data .
ln -s ../../../testsuite/tcl/p3m.tcl .
ln -s ../../../testsuite/tcl/pdb_parser.itp.dat .
ln -s ../../../testsuite/tcl/pdb_parser.pdb.dat .
ln -s ../../../testsuite/tcl/pdb_parser.tcl .
ln -s ../../../testsuite/tcl/pe_micelle.data .
ln -s ../../../testsuite/tcl/pe_micelle.tcl .
ln -s ../../../testsuite/tcl/quartic.tcl .
ln -s ../../../testsuite/tcl/rotate-system-dipoles.tcl .
ln -s ../../../testsuite/tcl/rotate-system.tcl .
ln -s ../../../testsuite/tcl/rotation_per_particle.tcl .
ln -s ../../../testsuite/tcl/rotation.tcl .
ln -s ../../../testsuite/tcl/runtest.sh.in .
ln -s ../../../testsuite/tcl/sc_fluid_gpu.tcl .
ln -s ../../../testsuite/tcl/sd_ewald.tcl .
ln -s ../../../testsuite/tcl/sd_thermalization.tcl .
ln -s ../../../testsuite/tcl/sd_two_spheres.tcl .
ln -s ../../../testsuite/tcl/tabulated_system.data .
ln -s ../../../testsuite/tcl/tabulated.tcl .
ln -s ../../../testsuite/tcl/tests_common.tcl .
ln -s ../../../testsuite/tcl/thermostat.data .
ln -s ../../../testsuite/tcl/thermostat_rot.data .
ln -s ../../../testsuite/tcl/tunable_slip.tcl .
ln -s ../../../testsuite/tcl/uwerr.data .
ln -s ../../../testsuite/tcl/uwerr.tcl .
ln -s ../../../testsuite/tcl/virtual-sites-rotation.tcl .
ln -s ../../../testsuite/tcl/virtual-sites.tcl .
** RUNNING TESTSUITE FOR 8 tasks
                       analysis.tcl - ok
                          angle.tcl - ok
                 bonded_coulomb.tcl - ok
    collision-detection-angular.tcl - ignored
    collision-detection-centers.tcl - ignored
       collision-detection-glue.tcl - ignored
        collision-detection-poc.tcl - ignored
                       comforce.tcl - ignored
                       comfixed.tcl - ignored
                 command_syntax.tcl - ok
                    constraints.tcl - ok
         constraints_reflecting.tcl - ok
                    correlation.tcl - ok
           constraints_rhomboid.tcl - ok
             coulomb_cloud_wall.tcl - ok
            dawaanr-and-dds-gpu.tcl - ignored
                             dh.tcl - ok
                     dielectric.tcl - ok
                       dihedral.tcl - ok
                            dpd.tcl - ignored
           ek_eof_one_species_x.tcl - ignored
           ek_eof_one_species_y.tcl - ignored
           ek_eof_one_species_z.tcl - ignored
 ek_eof_one_species_x_nonlinear.tcl - ignored
 ek_eof_one_species_y_nonlinear.tcl - ignored
 ek_eof_one_species_z_nonlinear.tcl - ignored
   ek_electrostatics_coupling_x.tcl - ignored
   ek_electrostatics_coupling_y.tcl - ignored
   ek_electrostatics_coupling_z.tcl - ignored
                    ek_reaction.tcl - ignored
                           el2d.tcl - ok
                el2d_nonneutral.tcl - ok
                engine_langevin.tcl - ignored
                      engine_lb.tcl - ignored
                   engine_lbgpu.tcl - ignored
                     exclusions.tcl - ok
             external_potential.tcl - ignored
                           fene.tcl - ok
                             gb.tcl - ignored
                           ghmc.tcl - ignored
                           harm.tcl - ok
                        quartic.tcl - ok
                         iccp3m.tcl - ok
              immersed_boundary.tcl - ignored
          immersed_boundary_gpu.tcl - ignored
                         intpbc.tcl - ok
                        intppbc.tcl - ok
                        kinetic.tcl - ok
                       langevin.tcl - ok
          langevin_per_particle.tcl - ignored
                        layered.tcl - ignored
                             lb.tcl - ignored
              lb_fluid_coupling.tcl - ignored
          lb_fluid_coupling_gpu.tcl - ignored
                         lb_gpu.tcl - ignored
                      lb_planar.tcl - ignored
                  lb_planar_gpu.tcl - ignored
   lb_planar_embedded_particles.tcl - ignored
lb_planar_embedded_particles_gpu.tcl - ignored
               lb_stokes_sphere.tcl - ignored
           lb_stokes_sphere_gpu.tcl - ignored
                   lees_edwards.tcl - ignored
                             lj.tcl - ok
                         lj-cos.tcl - ok
                     lj-generic.tcl - ok
                       madelung.tcl - ok
                          maggs.tcl - ok
                 magnetic-field.tcl - ignored
                           mass.tcl - ok
              mass-and-rinertia.tcl - ignored
 mass-and-rinertia_per_particle.tcl - ignored
                           mdlc.tcl - ignored
                minimize_energy.tcl - ok
       minimize_energy_rotation.tcl - ignored
                          mmm1d.tcl - ok
                       mmm1dgpu.tcl - ignored
                       ewaldgpu.tcl - ignored
                            npt.tcl - ok
                        nsquare.tcl - ok
                         nve_pe.tcl - ignored
                object_in_fluid.tcl - ignored
            object_in_fluid_gpu.tcl - ignored
                     observable.tcl - ignored
                            p3m.tcl - ok
                        p3m_gpu.tcl - ok
        p3m_gpu_simple_noncubic.tcl - ok
             p3m_magnetostatics.tcl - ignored
            p3m_magnetostatics2.tcl - ignored
            p3m_simple_noncubic.tcl - ok
                     pdb_parser.tcl - ok
                  rotate-system.tcl - ignored
          rotate-system-dipoles.tcl - ignored
                       rotation.tcl - ignored
          rotation_per_particle.tcl - ignored
                   sc_fluid_gpu.tcl - ignored
                       sd_ewald.tcl - ignored
                 sd_two_spheres.tcl - ignored
              sd_thermalization.tcl - ignored
                      tabulated.tcl - ok
                   tunable_slip.tcl - ignored
                          uwerr.tcl - ok
                  virtual-sites.tcl - ignored
         virtual-sites-rotation.tcl - ignored


**************************************************
** All tests were successful!
**************************************************

make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-2149-g9e129ce/_build/testsuite/tcl'>
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-2149-g9e129ce/_build/testsuite/tcl'>
Making check in python
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-2149-g9e129ce/_build/testsuite/python'>
make  check-local
make[4]: Entering directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-2149-g9e129ce/_build/testsuite/python'>
if test -n ""; then \
  ./runtest.sh -p "" bondedInteractions.py cellsystem.py 
electrostaticInteractions.py ewald_gpu.py magnetostaticInteractions.py 
nonBondedInteractions.py p3m_gpu.py particle.py; \
else \
  ./runtest.sh bondedInteractions.py cellsystem.py electrostaticInteractions.py 
ewald_gpu.py magnetostaticInteractions.py nonBondedInteractions.py p3m_gpu.py 
particle.py; \
fi
ln -s ../../../testsuite/python/bondedInteractions.py .
ln -s ../../../testsuite/python/cellsystem.py .
ln -s ../../../testsuite/python/electrostaticInteractions.py .
ln -s ../../../testsuite/python/ewald_gpu.py .
ln -s ../../../testsuite/python/magnetostaticInteractions.py .
ln -s ../../../testsuite/python/Makefile.am .
ln -s ../../../testsuite/python/Makefile.in .
ln -s ../../../testsuite/python/nonBondedInteractions.py .
ln -s ../../../testsuite/python/p3m_gpu.py .
ln -s ../../../testsuite/python/particle.py .
ln -s ../../../testsuite/python/runtest.sh.in .
** RUNNING TESTSUITE FOR 8 tasks
              bondedInteractions.py - ERROR (code=127)

Some test cases failed with 8 tasks, interrupting test suite.

**************************************************
** Not all test cases were successful!
** Have a look at the file testsuite/runtest.log
** for the output of the testcases.
**************************************************
** The testsuite was interrupted!
**************************************************

Makefile:538: recipe for target 'check-local' failed
make[4]: *** [check-local] Error 1
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-2149-g9e129ce/_build/testsuite/python'>
Makefile:419: recipe for target 'check-am' failed
make[3]: *** [check-am] Error 2
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-2149-g9e129ce/_build/testsuite/python'>
Makefile:435: recipe for target 'check-recursive' failed
make[2]: *** [check-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-2149-g9e129ce/_build/testsuite'>
Makefile:481: recipe for target 'check-recursive' failed
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-nightly-distcheck/ws/espresso-3.4-dev-2149-g9e129ce/_build'>
Makefile:684: recipe for target 'distcheck' failed
make: *** [distcheck] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts