[Espressomd-maintainer] Build failed in Jenkins: master-python-interface #568

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-python-interface/568/changes>

Changes:

[kai] code_info: CMake now calls gen_code_info.py and generates code_info_pyx.

[kai] code_info: GLOB of pyx files now also includes code_info.pyx.

[Christoph Junghans] cmake: fix regex for soversion & stricter check

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[...truncated 480 lines...]
  CXX      halo.lo
  CXX      iccp3m.lo
  CXX      imd.lo
  CXX      initialize.lo
  CXX      integrate.lo
  CXX      interaction_data.lo
  CXX      lattice.lo
  CXX      layered.lo
  CXX      lb.lo
  CXX      lb-boundaries.lo
  CXX      lbgpu.lo
  CXX      lees_edwards.lo
  CXX      lees_edwards_domain_decomposition.lo
  CXX      lees_edwards_comms_manager.lo
  CXX      metadynamics.lo
  CXX      minimize_energy.lo
  CXX      modes.lo
  CXX      molforces.lo
  CXX      mol_cut.lo
  CXX      nemd.lo
  CXX      npt.lo
  CXX      nsquare.lo
  CXX      particle_data.lo
  CXX      polymer.lo
  CXX      polynom.lo
  CXX      pressure.lo
  CXX      random.lo
  CXX      rattle.lo
  CXX      reaction.lo
  CXX      readpdb.lo
  CXX      Ringbuffer.lo
  CXX      rotate_system.lo
  CXX      rotation.lo
  CXX      RuntimeError.lo
  CXX      RuntimeErrorCollector.lo
  CXX      RuntimeErrorStream.lo
  CXX      scafacos.lo
  CXX      specfunc.lo
  CXX      statistics.lo
  CXX      statistics_chain.lo
  CXX      statistics_cluster.lo
  CXX      statistics_correlation.lo
  CXX      statistics_fluid.lo
  CXX      statistics_molecule.lo
  CXX      statistics_observable.lo
  CXX      statistics_wallstuff.lo
  CXX      thermostat.lo
  CXX      topology.lo
  CXX      tuning.lo
  CXX      utils.lo
  CXX      uwerr.lo
  CXX      verlet.lo
  CXX      virtual_sites.lo
  CXX      virtual_sites_com.lo
  CXX      virtual_sites_relative.lo
  CXX      vmdsock.lo
  CXX      ghmc.lo
  CXX      Vector.lo
  CXX      SystemInterface.lo
  CXX      integrate_sd.lo
  CXX      EspressoSystemInterface.lo
  CXX      PdbParser.lo
  CXX      mpiio.lo
  CXX      MpiCallbacks.lo
  CXX      bmhtf-nacl.lo
  CXX      buckingham.lo
  CXX      cos2.lo
  CXX      dpd.lo
  CXX      gaussian.lo
  CXX      gb.lo
  CXX      hat.lo
  CXX      hertzian.lo
  CXX      lj.lo
  CXX      ljangle.lo
  CXX      ljcos.lo
  CXX      ljcos2.lo
  CXX      ljgen.lo
  CXX      morse.lo
  CXX      soft_sphere.lo
  CXX      object-in-fluid/affinity.lo
  CXX      object-in-fluid/membrane_collision.lo
  CXX      steppot.lo
  CXX      tab.lo
  CXX      tunable_slip.lo
  CXX      angle.lo
  CXX      angle_harmonic.lo
  CXX      angle_cosine.lo
  CXX      angle_cossquare.lo
  CXX      angledist.lo
  CXX      dihedral.lo
  CXX      endangledist.lo
  CXX      fene.lo
  CXX      harmonic_dumbbell.lo
  CXX      harmonic.lo
  CXX      quartic.lo
  CXX      overlap.lo
  CXX      umbrella.lo
  CXX      bonded_coulomb.lo
  CXX      subt_lj.lo
  CXX      object-in-fluid/oif_global_forces.lo
  CXX      object-in-fluid/oif_local_forces.lo
  CXX      object-in-fluid/out_direction.lo
  CXX      hydrogen_bond.lo
  CXX      twist_stack.lo
  CXX      immersed_boundary/ibm_main.lo
  CXX      immersed_boundary/ibm_triel.lo
  CXX      immersed_boundary/ibm_volume_conservation.lo
  CXX      immersed_boundary/ibm_tribend.lo
  CXX      immersed_boundary/ibm_cuda_interface.lo
  CXX      debye_hueckel.lo
  CXX      elc.lo
  CXX      magnetic_non_p3m_methods.lo
  CXX      mdlc_correction.lo
  CXX      maggs.lo
  CXX      mmm1d.lo
  CXX      mmm2d.lo
  CXX      mmm-common.lo
  CXX      p3m.lo
  CXX      p3m-common.lo
  CXX      p3m-dipolar.lo
  CXX      reaction_field.lo
  CXX      actor/ActorList.lo
  CXX      actor/HarmonicWell.lo
  CXX      actor/HarmonicOrientationWell.lo
  CXX      actor/Mmm1dgpuForce.lo
  CXX      actor/EwaldGPU.lo
  CXX      actor/DipolarDirectSum.lo
  GEN      config-version.cpp
  CXX      config-version.lo
  NVCC     cuda_init_cuda.lo
  NVCC     cuda_common_cuda.lo
  NVCC     electrokinetics_cuda.lo
  NVCC     fd-electrostatics_cuda.lo
  NVCC     lbgpu_cuda.lo
  NVCC     p3m_gpu_cuda.lo
  NVCC     EspressoSystemInterface_cuda.lo
  NVCC     integrate_sd_cuda.lo
  NVCC     integrate_sd_cuda_kernel.lo
  NVCC     integrate_sd_cuda_debug.lo
  NVCC     integrate_sd_matrix.lo
  NVCC     integrate_sd_cuda_device.lo
  NVCC     actor/Mmm1dgpuForce_cuda.lo
  NVCC     actor/EwaldGPU_cuda.lo
  NVCC     actor/HarmonicWell_cuda.lo
  NVCC     immersed_boundary/ibm_cuda.lo
  NVCC     actor/DipolarDirectSum_cuda.lo
  NVCC     actor/HarmonicOrientationWell_cuda.lo
  NVCC     p3m_gpu_error_cuda.lo
  CXXLD    libEspresso.la
make[5]: Leaving directory 
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make[4]: Leaving directory 
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make[3]: Leaving directory 
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Making all in python/espressomd
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
Makefile:776: target 'galilei.cpp' given more than once in the same rule
Makefile:779: target 'galilei.la' given more than once in the same rule
Makefile:783: target 'galilei.so' given more than once in the same rule
  GEN      gen_pxiconfig.cpp
Reading definitions from ../../../src/features.def...
Done.
Writing gen_pxiconfig.cpp...
Done.
  CXXLD    gen_pxiconfig
  GEN      myconfig.pxi
make  all-am
make[4]: Entering directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
Makefile:776: target 'galilei.cpp' given more than once in the same rule
Makefile:779: target 'galilei.la' given more than once in the same rule
Makefile:783: target 'galilei.so' given more than once in the same rule
  CXX      dummy.o
  CXXLD    dummy
  GEN      python-all
/usr/bin/install: cannot stat ‘./visualization.py’: No such file or directory
  CYTHON   _init.cpp
  CXX      _init.lo
  CXXLD    _init.la
libtool: link: warning: ignoring multiple `-rpath's for a libtool library
  GEN      libEspresso.so
  GEN      _init.so
  CYTHON   _system.cpp
  CXX      _system.lo
In file included from ../../../src/core/domain_decomposition.hpp:62:0,
                 from _system.cpp:259:
../../../src/core/thermostat.hpp: In function 'void 
friction_thermo_langevin(Particle*)':
../../../src/core/thermostat.hpp:185:52: warning: unused variable 
'langevin_temp_coeff' [-Wunused-variable]
   double langevin_pref1_temp, langevin_pref2_temp, langevin_temp_coeff;
                                                    ^
  CXXLD    _system.la
libtool: link: warning: ignoring multiple `-rpath's for a libtool library
  GEN      _system.so
  CYTHON   actors.cpp
  CXX      actors.lo
  CXXLD    actors.la
libtool: link: warning: ignoring multiple `-rpath's for a libtool library
  GEN      actors.so
  CYTHON   analyze.cpp
warning: analyze.pyx:858:76: Unreachable code
  CXX      analyze.lo
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from analyze.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
In file included from ../../../src/core/pressure.hpp:31:0,
                 from analyze.cpp:264:
../../../src/core/thermostat.hpp: In function 'void 
friction_thermo_langevin(Particle*)':
../../../src/core/thermostat.hpp:185:52: warning: unused variable 
'langevin_temp_coeff' [-Wunused-variable]
   double langevin_pref1_temp, langevin_pref2_temp, langevin_temp_coeff;
                                                    ^
In file included from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
                 from 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from analyze.cpp:251:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h: 
At global scope:
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1:
 warning: 'int _import_array()' defined but not used [-Wunused-function]
 _import_array(void)
 ^
  CXXLD    analyze.la
libtool: link: warning: ignoring multiple `-rpath's for a libtool library
  GEN      analyze.so
  CYTHON   cellsystem.cpp
  CXX      cellsystem.lo
In file included from ../../../src/core/domain_decomposition.hpp:62:0,
                 from cellsystem.cpp:257:
../../../src/core/thermostat.hpp: In function 'void 
friction_thermo_langevin(Particle*)':
../../../src/core/thermostat.hpp:185:52: warning: unused variable 
'langevin_temp_coeff' [-Wunused-variable]
   double langevin_pref1_temp, langevin_pref2_temp, langevin_temp_coeff;
                                                    ^
  CXXLD    cellsystem.la
libtool: link: warning: ignoring multiple `-rpath's for a libtool library
  GEN      cellsystem.so
make[4]: *** No rule to make target 'code_info.pyx', needed by 'code_info.cpp'. 
 Stop.
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-python-interface/ws/src/python/espressomd'>
Makefile:466: recipe for target 'all' failed
make[3]: *** [all] Error 2
make[3]: Leaving directory 
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Makefile:464: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
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Makefile:403: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
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Makefile:491: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts