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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multicon
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From: |
Jenkins Demon |
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Subject: |
[Espressomd-maintainer] Build failed in Jenkins: master-nightly-multiconfig » lees-edwards,3core #377 |
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Date: |
Fri, 19 Aug 2016 04:15:58 +0200 (CEST) |
See
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/377/changes>
Changes:
[kai] h5mdtcl: changed filename behaviour.
[kai] h5mdtcl: fixed bug in writing user defined variables to h5 and adjusted
[kai] h5mdtcl: update of docu for new filename behaviour.
------------------------------------------
[...truncated 282 lines...]
****************************************************************
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating src/core/unit_tests/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating testsuite/tcl/Makefile
config.status: creating testsuite/python/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/tcl/Makefile
config.status: creating doc/tutorials/tcl/00-building_espresso/Makefile
config.status: creating doc/tutorials/tcl/01-lennard_jones/Makefile
config.status: creating doc/tutorials/tcl/02-charged_system/Makefile
config.status: creating doc/tutorials/tcl/03-object_in_fluid/Makefile
config.status: creating doc/tutorials/tcl/04-lattice_boltzmann/Makefile
config.status: creating doc/tutorials/tcl/05-raspberry_electrophoresis/Makefile
config.status: creating doc/tutorials/tcl/06-active_matter/Makefile
config.status: creating doc/tutorials/tcl/07-electrokinetics/Makefile
config.status: creating doc/tutorials/tcl/08-visualization/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/tcl/runtest.sh
config.status: creating testsuite/python/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
configure: WARNING: unrecognized options: --with-mpi
****************************************************************
* Configuration summary *
****************************************************************
platform detected = x86_64-suse-linux-gnu
package version = 3.4-dev-2681-g150dd3a
development sources = yes
Compiler
--------
compiler = mpic++
linker = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags = -std=c++11
c++ preprocessor flags = -I/usr/local/cuda/include
linker flags = -L/usr/local/cuda/lib64
libraries = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart
-lfftw3 -lm -ldl -lboost_mpi-mt
using debug flags =
using profiling flags =
cython complier =
cython preproc flags =
Libraries
---------
FFTW = yes
efence = no
h5md = yes
boost_test =
Cuda
----
CUDA compiler = /usr/local/cuda/bin/nvcc
CUDA flags = -O3 -std c++11 --ptxas-options=-v -gencode
arch=compute_20,code=compute_20
Tcl/Tk
------
Tcl version = tcl8.6
Tk version = none
Python
------
python = /usr/bin/python -B
build python interface =
Other settings
--------------
config = myconfig.hpp
installation prefix = /home/jenkins/Espresso
number of test tasks = 8
mympiexec =
mpiexec = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex = /group/icp/texlive/bin/x86_64-linux/pdflatex
makeindex = /group/icp/texlive/bin/x86_64-linux/makeindex
bibtex = /group/icp/texlive/bin/x86_64-linux/bibtex
doxygen = /usr/bin/doxygen
dot = /usr/bin/dot
Not building Python interface.
****************************************************************
* DEPRECATION WARNING: The autoconf/autotools build system *
* will be replaced by cmake in the future. *
* New features are only available via cmake. *
****************************************************************
END CONFIGURE
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/>
+ maintainer/jenkins/build.sh
13651 (process ID) old priority 0, new priority 5
srcdir=<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/>
builddir=<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/>
insource=true
parallelism=3core
START BUILD
myconfig=lees-edwards
build_procs=4
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/>
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/>
Copying lees-edwards.hpp to
<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/myconfig.hpp...>
>make -j 4
Making all in config
make[1]: Entering directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/config'>
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/config'>
Making all in src
make[1]: Entering directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src'>
make all-recursive
make[2]: Entering directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src'>
Making all in core
make[3]: Entering directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src/core'>
GEN myconfig-final.hpp <= ../../myconfig.hpp
GEN config-features.hpp
GEN config-features.cpp
make all-recursive
make[4]: Entering directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src/core'>
make[5]: Entering directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src/core'>
CXX config-features.lo
CXX cells.lo
CXX collision.lo
CXX communication.lo
CXX comfixed.lo
In file included from cells.cpp:32:0:
grid.hpp: In function 'void fold_coordinate(double*, double*, int*, int)':
grid.hpp:229:24: error: 'lees_edwards_offset' was not declared in this scope
pos[0] -= (lees_edwards_offset * img_count);
^
grid.hpp:230:24: error: 'lees_edwards_rate' was not declared in this scope
vel[0] -= (lees_edwards_rate * img_count);
^
grid.hpp: In function 'void unfold_position(double*, double*, int*)':
grid.hpp:302:49: error: 'lees_edwards_offset' was not declared in this scope
pos[0] += image_box[0]*box_l[0] + y_img_count*lees_edwards_offset;
^
grid.hpp:306:27: error: 'lees_edwards_rate' was not declared in this scope
vel[0] += y_img_count * lees_edwards_rate;
^
In file included from collision.cpp:24:0:
grid.hpp: In function 'void fold_coordinate(double*, double*, int*, int)':
grid.hpp:229:24: error: 'lees_edwards_offset' was not declared in this scope
pos[0] -= (lees_edwards_offset * img_count);
^
grid.hpp:230:24: error: 'lees_edwards_rate' was not declared in this scope
vel[0] -= (lees_edwards_rate * img_count);
^
grid.hpp: In function 'void unfold_position(double*, double*, int*)':
grid.hpp:302:49: error: 'lees_edwards_offset' was not declared in this scope
pos[0] += image_box[0]*box_l[0] + y_img_count*lees_edwards_offset;
^
grid.hpp:306:27: error: 'lees_edwards_rate' was not declared in this scope
vel[0] += y_img_count * lees_edwards_rate;
^
In file included from domain_decomposition.hpp:62:0,
from cells.cpp:40:
thermostat.hpp: In function 'double le_frameV(int, double*, double*)':
thermostat.hpp:150:32: error: 'lees_edwards_rate' was not declared in this scope
return( vel[0] - relY * lees_edwards_rate );
^
In file included from domain_decomposition.hpp:62:0,
from collision.cpp:25:
thermostat.hpp: In function 'double le_frameV(int, double*, double*)':
thermostat.hpp:150:32: error: 'lees_edwards_rate' was not declared in this scope
return( vel[0] - relY * lees_edwards_rate );
^
In file included from comfixed.cpp:29:0:
grid.hpp: In function 'void fold_coordinate(double*, double*, int*, int)':
grid.hpp:229:24: error: 'lees_edwards_offset' was not declared in this scope
pos[0] -= (lees_edwards_offset * img_count);
^
grid.hpp:230:24: error: 'lees_edwards_rate' was not declared in this scope
vel[0] -= (lees_edwards_rate * img_count);
^
grid.hpp: In function 'void unfold_position(double*, double*, int*)':
grid.hpp:302:49: error: 'lees_edwards_offset' was not declared in this scope
pos[0] += image_box[0]*box_l[0] + y_img_count*lees_edwards_offset;
^
grid.hpp:306:27: error: 'lees_edwards_rate' was not declared in this scope
vel[0] += y_img_count * lees_edwards_rate;
^
Makefile:1019: recipe for target 'cells.lo' failed
make[5]: *** [cells.lo] Error 1
make[5]: *** Waiting for unfinished jobs....
Makefile:1019: recipe for target 'collision.lo' failed
make[5]: *** [collision.lo] Error 1
Makefile:1019: recipe for target 'comfixed.lo' failed
make[5]: *** [comfixed.lo] Error 1
In file included from statistics.hpp:29:0,
from energy.hpp:39,
from communication.cpp:44:
grid.hpp: In function 'void fold_coordinate(double*, double*, int*, int)':
grid.hpp:229:24: error: 'lees_edwards_offset' was not declared in this scope
pos[0] -= (lees_edwards_offset * img_count);
^
grid.hpp:230:24: error: 'lees_edwards_rate' was not declared in this scope
vel[0] -= (lees_edwards_rate * img_count);
^
grid.hpp: In function 'void unfold_position(double*, double*, int*)':
grid.hpp:302:49: error: 'lees_edwards_offset' was not declared in this scope
pos[0] += image_box[0]*box_l[0] + y_img_count*lees_edwards_offset;
^
grid.hpp:306:27: error: 'lees_edwards_rate' was not declared in this scope
vel[0] += y_img_count * lees_edwards_rate;
^
In file included from domain_decomposition.hpp:62:0,
from iccp3m.hpp:61,
from forces.hpp:31,
from communication.cpp:46:
thermostat.hpp: In function 'double le_frameV(int, double*, double*)':
thermostat.hpp:150:32: error: 'lees_edwards_rate' was not declared in this scope
return( vel[0] - relY * lees_edwards_rate );
^
Makefile:1019: recipe for target 'communication.lo' failed
make[5]: *** [communication.lo] Error 1
make[5]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src/core'>
Makefile:1042: recipe for target 'all-recursive' failed
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src/core'>
Makefile:711: recipe for target 'all' failed
make[3]: *** [all] Error 2
make[3]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src/core'>
Makefile:455: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src'>
Makefile:393: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory
'<http://espressomd.org/jenkins/job/master-nightly-multiconfig/myconfig=lees-edwards,parallelism=3core/ws/src'>
Makefile:481: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE