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[Espressomd-maintainer] Build failed in Jenkins: master-doc #625


From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-doc #625
Date: Fri, 23 Sep 2016 08:38:16 +0200 (CEST)

See <http://espressomd.org/jenkins/job/master-doc/625/changes>

Changes:

[jonaslandsgesell] added documentation for random number generator functions in 
python and

------------------------------------------
[...truncated 197 lines...]
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checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking whether to use FFTW... yes
checking for libfftw3... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking for libcublas... yes
checking for cublas_v2.h... yes
checking for libcurand... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
checking for Boost headers version >= 0.0.0... yes
checking for Boost's header version... 1_54
checking for the toolset name used by Boost for mpic++... gcc48 -gcc
checking boost/mpi.hpp usability... yes
checking boost/mpi.hpp presence... yes
checking for boost/mpi.hpp... yes
checking for the Boost mpi library... yes
checking boost/archive/text_oarchive.hpp usability... yes
checking boost/archive/text_oarchive.hpp presence... yes
checking for boost/archive/text_oarchive.hpp... yes
checking for the Boost serialization library... (cached) yes
checking boost/test/unit_test.hpp usability... yes
checking boost/test/unit_test.hpp presence... yes
checking for boost/test/unit_test.hpp... yes
checking for the Boost unit_test_framework library... (cached) yes
checking whether to use MAGMA... guess
checking for library containing magma_init... no
configure: WARNING: MAGMA not found. Some features will not be available!
checking whether to use ARPACK... guess
checking for libarpack... no
configure: WARNING: could not find ARPACK library. Some features will not be 
available!
configure: WARNING: ARPACK not found. Some features will not be available!
****************************************************************
*                  Checking for Python                         *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib64/python2.7/site-packages
checking whether python -B works... yes
checking whether the python interface is wanted... no
****************************************************************
*                  Checking for Tcl/Tk                         *
****************************************************************
checking whether to build the Tcl interface... yes
checking for libtcl8.6... yes
checking for tcl.h... yes
checking whether to use Tk... yes
****************************************************************
*                          h5md                                *
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checking whether to build with h5md support... yes
checking for libhdf5... yes
checking for hdf5.h... yes
****************************************************************
*                   Other settings                             *
****************************************************************
checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
****************************************************************
*                   Creating output files                      *
****************************************************************
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating src/core/unit_tests/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating testsuite/tcl/Makefile
config.status: creating testsuite/python/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/tcl/Makefile
config.status: creating doc/tutorials/tcl/00-building_espresso/Makefile
config.status: creating doc/tutorials/tcl/01-lennard_jones/Makefile
config.status: creating doc/tutorials/tcl/02-charged_system/Makefile
config.status: creating doc/tutorials/tcl/03-object_in_fluid/Makefile
config.status: creating doc/tutorials/tcl/04-lattice_boltzmann/Makefile
config.status: creating doc/tutorials/tcl/05-raspberry_electrophoresis/Makefile
config.status: creating doc/tutorials/tcl/06-active_matter/Makefile
config.status: creating doc/tutorials/tcl/07-electrokinetics/Makefile
config.status: creating doc/tutorials/tcl/08-visualization/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/tcl/runtest.sh
config.status: creating testsuite/python/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
configure: WARNING: unrecognized options: --with-mpi
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-2885-gc140700
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      =  -std=c++11
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart 
-lfftw3  -lm -ldl -lboost_mpi-mt
using debug flags       = 
using profiling flags   = 

cython complier         = 
cython preproc flags    = 


Libraries
---------
FFTW                    = yes
efence                  = no
h5md                    = yes
boost_test              = 

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  -O3 -std c++11 --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /group/icp/texlive/bin/x86_64-linux/pdflatex
makeindex               = /group/icp/texlive/bin/x86_64-linux/makeindex
bibtex                  = /group/icp/texlive/bin/x86_64-linux/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
****************************************************************
* DEPRECATION WARNING: The autoconf/autotools build system     *
* will be replaced by cmake in the future.                     *
* New features are only available via cmake.                   *
****************************************************************
END CONFIGURE
<http://espressomd.org/jenkins/job/master-doc/ws/>
+ maintainer/jenkins/doc.sh
23996 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-doc/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-doc/ws/>
  insource=true
<http://espressomd.org/jenkins/job/master-doc/ws/> 
<http://espressomd.org/jenkins/job/master-doc/ws/>
START DOC
>make doc
cd doc; make --print-directory doc
make[1]: Entering directory 
'<http://espressomd.org/jenkins/job/master-doc/ws/doc'>
cd ug; make --print-directory ug
make[2]: Entering directory 
'<http://espressomd.org/jenkins/job/master-doc/ws/doc/ug'>
Assembling quickref.inp..
Running LaTeX..
sh ../latexit.sh . ug
TEXINPUTS=.:.:<http://espressomd.org/jenkins/job/master-doc/ws/doc>:
ESPRESSO_VERSION=3.4-dev-2885-gc140700
Running LaTeX stage 1...
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015) (preloaded 
format=pdflatex)
 restricted \write18 enabled.
entering extended mode
ERROR: LaTeX stage 1 failed.
These are the last 20 lines of ug.log:
--------------------------------------------
Package longtable Warning: Table widths have changed. Rerun LaTeX.

Package atveryend Info: Empty hook `BeforeClearDocument' on input line 420.
Package atveryend Info: Empty hook `AfterLastShipout' on input line 420.
(./ug.aux (./introduction.aux
! Missing \endcsname inserted.
<to be read again> 
                   \unhbox 
l.23 ... on Ubuntu 16.04 LTS}{subsection.1.5.1}{}}
                                                   
Here is how much of TeX's memory you used:
 31218 strings out of 493033
 584455 string characters out of 6131886
 695963 words of memory out of 5000000
 33072 multiletter control sequences out of 15000+600000
 21795 words of font info for 79 fonts, out of 8000000 for 9000
 1141 hyphenation exceptions out of 8191
 65i,16n,76p,10419b,1752s stack positions out of 
5000i,500n,10000p,200000b,80000s

!  ==> Fatal error occurred, no output PDF file produced!
--------------------------------------------
Makefile:586: recipe for target 'ug.pdf' failed
make[2]: *** [ug.pdf] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-doc/ws/doc/ug'>
Makefile:702: recipe for target 'ug' failed
make[1]: *** [ug] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-doc/ws/doc'>
Makefile:935: recipe for target 'doc' failed
make: *** [doc] Error 2
Build step 'Execute shell' marked build as failure
Archiving artifacts
Recording fingerprints



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