[Espressomd-maintainer] Build failed in Jenkins: master-build-python #2

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-build-python/2/changes>

Changes:

[henri] Flip charge with partner, rather than just flipping sign

[henri] Ditch std::random_shuffle in favour of std::shuffle

[henri] Document the swap swimmer

[henri] Draft for catalytic reactions tutorial

[henri] Integration of 09-catalytic_reactions into automake

[henri] Nicer graphics in 09-catalytic_reactions

[henri] Updated reaction tutorial

[henri] Reaction tutorial: Correct build system intergration

[henri] Improvements by Joost de Graaf

[henri] Checkpointing of the RNG works again

[Tilak Waelde] changed jenkins cmake script

[github] Fix build w/ IMMERSED_BOUNDARY

[github] Fix Travis Mac builds after build environment changes

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    runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
      /usr/lib64/mpi/gcc/openmpi/lib64

  Some of these libraries may not be found correctly.


CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
  Cannot generate a safe runtime search path for target polymer because files
  in some directories may conflict with libraries in implicit directories:

    runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
      /usr/lib64/mpi/gcc/openmpi/lib64

  Some of these libraries may not be found correctly.


CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
  Cannot generate a safe runtime search path for target reaction because
  files in some directories may conflict with libraries in implicit
  directories:

    runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
      /usr/lib64/mpi/gcc/openmpi/lib64

  Some of these libraries may not be found correctly.


CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
  Cannot generate a safe runtime search path for target scafacos because
  files in some directories may conflict with libraries in implicit
  directories:

    runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
      /usr/lib64/mpi/gcc/openmpi/lib64

  Some of these libraries may not be found correctly.


CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
  Cannot generate a safe runtime search path for target thermostat because
  files in some directories may conflict with libraries in implicit
  directories:

    runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
      /usr/lib64/mpi/gcc/openmpi/lib64

  Some of these libraries may not be found correctly.


CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
  Cannot generate a safe runtime search path for target utils because files
  in some directories may conflict with libraries in implicit directories:

    runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
      /usr/lib64/mpi/gcc/openmpi/lib64

  Some of these libraries may not be found correctly.


CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
  Cannot generate a safe runtime search path for target visualization because
  files in some directories may conflict with libraries in implicit
  directories:

    runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
      /usr/lib64/mpi/gcc/openmpi/lib64

  Some of these libraries may not be found correctly.


CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
  Cannot generate a safe runtime search path for target visualizationMayavi
  because files in some directories may conflict with libraries in implicit
  directories:

    runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
      /usr/lib64/mpi/gcc/openmpi/lib64

  Some of these libraries may not be found correctly.


-- Generating done
-- Build files have been written to: 
<http://espressomd.org/jenkins/job/master-build-python/ws/build>
[  0%] Built target myconfig
[  1%] Built target EspressoConfig
Scanning dependencies of target MpiCallbacks_test
[  1%] Building CXX object 
src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/MpiCallbacks_test.cpp.o
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src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/__/MpiCallbacks.cpp.o
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[  2%] Built target MpiCallbacks_test
Scanning dependencies of target Vector_test
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src/core/unit_tests/CMakeFiles/Vector_test.dir/Vector_test.cpp.o
[  3%] Linking CXX executable Vector_test
[  3%] Built target Vector_test
Scanning dependencies of target RuntimeError_test
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src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/RuntimeError_test.cpp.o
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Scanning dependencies of target RunningAverage_test
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src/core/unit_tests/CMakeFiles/RunningAverage_test.dir/RunningAverage_test.cpp.o
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Scanning dependencies of target RuntimeErrorCollector_test
[  4%] Building CXX object 
src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/RuntimeErrorCollector_test.cpp.o
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src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/__/RuntimeErrorCollector.cpp.o
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src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/__/RuntimeError.cpp.o
[  5%] Linking CXX executable RuntimeErrorCollector_test
[  5%] Built target RuntimeErrorCollector_test
Scanning dependencies of target NumeratedContainer_test
[  5%] Building CXX object 
src/core/unit_tests/CMakeFiles/NumeratedContainer_test.dir/NumeratedContainer_test.cpp.o
[  5%] Linking CXX executable NumeratedContainer_test
[  5%] Built target NumeratedContainer_test
Scanning dependencies of target check_unit_tests
Test project 
<http://espressomd.org/jenkins/job/master-build-python/ws/build/src/core/unit_tests>
    Start 1: Vector_test
1/6 Test #1: Vector_test ......................   Passed    0.02 sec
    Start 2: RuntimeError_test
2/6 Test #2: RuntimeError_test ................   Passed    0.01 sec
    Start 3: RunningAverage_test
3/6 Test #3: RunningAverage_test ..............   Passed    0.01 sec
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4/6 Test #4: RuntimeErrorCollector_test .......   Passed    0.15 sec
    Start 5: NumeratedContainer_test
5/6 Test #5: NumeratedContainer_test ..........   Passed    0.01 sec
    Start 6: MpiCallbacks_test
6/6 Test #6: MpiCallbacks_test ................   Passed    0.12 sec

100% tests passed, 0 tests failed out of 6

Total Test time (real) =   0.31 sec
[  5%] Built target check_unit_tests
[  6%] Built target gen_pxiconfig
[  7%] Linking CXX shared library libImmersedBoundaryCuda.so
[  7%] Built target ImmersedBoundaryCuda
Scanning dependencies of target EspressoCuda
[  7%] Linking CXX shared library libEspressoCuda.so
[ 11%] Built target EspressoCuda
[ 11%] Linking CXX shared library libActorCuda.so
[ 12%] Built target ActorCuda
[ 13%] Linking CXX shared library libActor.so
[ 14%] Built target Actor
[ 14%] Linking CXX shared library libImmersedBoundary.so
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[ 18%] Built target ObjectInFluid
[ 18%] Linking CXX shared library libEspressoCore.so
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[ 65%] Linking CXX shared library visualizationMayavi.so
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[ 67%] Linking CXX shared library interactions.so
[ 67%] Built target interactions
[ 67%] Linking CXX shared library utils.so
[ 68%] Built target utils
[ 68%] Linking CXX shared library cellsystem.so
[ 69%] Built target cellsystem
[ 70%] Linking CXX shared library debye_hueckel.so
[ 71%] Built target debye_hueckel
[ 72%] Linking CXX shared library electrostatic_extensions.so
[ 72%] Built target electrostatic_extensions
[ 72%] Linking CXX shared library magnetostatics.so
[ 73%] Built target magnetostatics
[ 74%] Linking CXX shared library electrokinetics.so
[ 75%] Built target electrokinetics
[ 75%] Linking CXX shared library minimize_energy.so
[ 76%] Built target minimize_energy
[ 77%] Linking CXX shared library integrate.so
[ 78%] Built target integrate
[ 78%] Linking CXX shared library galilei.so
[ 80%] Built target galilei
[ 80%] Linking CXX shared library _init.so
[ 81%] Built target _init
[ 82%] Linking CXX shared library polymer.so
[ 82%] Built target polymer
[ 82%] Linking CXX shared library actors.so
[ 83%] Built target actors
[ 83%] Linking CXX shared library magnetostatic_extensions.so
[ 84%] Built target magnetostatic_extensions
[ 84%] Linking CXX shared library _system.so
[ 85%] Built target _system
[ 85%] Linking CXX shared library visualization.so
[ 86%] Built target visualization
[ 86%] Linking CXX shared library electrostatics.so
[ 87%] Built target electrostatics
[ 87%] Linking CXX shared library grand_canonical.so
[ 88%] Built target grand_canonical
[ 88%] Linking CXX shared library scafacos.so
[ 89%] Built target scafacos
[ 90%] Linking CXX shared library particle_data.so
[ 91%] Built target particle_data
[ 91%] Linking CXX shared library reaction.so
[ 92%] Built target reaction
[ 92%] Linking CXX shared library lb.so
[ 93%] Built target lb
[ 93%] Linking CXX shared library h5md.so
[ 94%] Built target h5md
[ 95%] Linking CXX shared library analyze.so
[ 96%] Built target analyze
[ 96%] Linking CXX shared library cuda_init.so
[ 97%] Built target cuda_init
[ 97%] Linking CXX shared library thermostat.so
[ 98%] Built target thermostat
[ 98%] Linking CXX shared library diamond.so
[100%] Built target diamond
[100%] Built target espressomd
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Scanning dependencies of target python_tests
[100%] Built target python_tests
Scanning dependencies of target check_python
Test project 
<http://espressomd.org/jenkins/job/master-build-python/ws/build/testsuite/python>
      Start  1: bondedInteractions
 1/12 Test  #1: bondedInteractions ...............   Passed    0.23 sec
      Start  2: cellsystem
 2/12 Test  #2: cellsystem .......................   Passed    0.22 sec
      Start  3: coulomb_cloud_wall
 3/12 Test  #3: coulomb_cloud_wall ...............   Passed    4.49 sec
      Start  4: electrostaticInteractions
 4/12 Test  #4: electrostaticInteractions ........   Passed    3.89 sec
      Start  5: engine_langevin
 5/12 Test  #5: engine_langevin ..................   Passed    0.24 sec
      Start  6: engine_lb
 6/12 Test  #6: engine_lb ........................   Passed    3.21 sec
      Start  7: ewald_gpu
 7/12 Test  #7: ewald_gpu ........................   Passed    0.76 sec
      Start  8: magnetostaticInteractions
 8/12 Test  #8: magnetostaticInteractions ........   Passed    0.75 sec
      Start  9: nonBondedInteractions
 9/12 Test  #9: nonBondedInteractions ............   Passed    0.22 sec
      Start 10: p3m_gpu
10/12 Test #10: p3m_gpu ..........................   Passed    1.02 sec
      Start 11: particle
11/12 Test #11: particle .........................   Passed    0.22 sec
      Start 12: tabulated
12/12 Test #12: tabulated ........................   Passed    0.26 sec

100% tests passed, 0 tests failed out of 12

Total Test time (real) =  15.51 sec
[100%] Built target check_python
Scanning dependencies of target check
[100%] Built target check
make check returned 0
==================================================
END TEST
==================================================
Archiving artifacts
ERROR: No artifacts found that match the file pattern 
"config.log,testsuite/runtest.log". Configuration error?
ERROR: ‘config.log’ doesn’t match anything
Build step 'Archive the artifacts' changed build result to FAILURE