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[Espressomd-maintainer] Build failed in Jenkins: py #16
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From: |
Jenkins Demon |
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Subject: |
[Espressomd-maintainer] Build failed in Jenkins: py #16 |
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Date: |
Tue, 31 Jan 2017 15:19:04 +0100 (CET) |
See <http://espressomd.org/jenkins/job/py/16/changes>
Changes:
[sschoell] add particle mass to cuda interface
[sschoell] remove total momentum (debug)
[sschoell] remove total momentum
[sschoell] bugfix
------------------------------------------
[...truncated 15.81 KB...]
because files in some directories may conflict with libraries in implicit
directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
Cannot generate a safe runtime search path for target particle_data because
files in some directories may conflict with libraries in implicit
directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
Cannot generate a safe runtime search path for target polymer because files
in some directories may conflict with libraries in implicit directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
Cannot generate a safe runtime search path for target reaction because
files in some directories may conflict with libraries in implicit
directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
Cannot generate a safe runtime search path for target scafacos because
files in some directories may conflict with libraries in implicit
directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
Cannot generate a safe runtime search path for target thermostat because
files in some directories may conflict with libraries in implicit
directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
Cannot generate a safe runtime search path for target utils because files
in some directories may conflict with libraries in implicit directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
Cannot generate a safe runtime search path for target visualization because
files in some directories may conflict with libraries in implicit
directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
CMake Warning at src/python/espressomd/CMakeLists.txt:76 (add_library):
Cannot generate a safe runtime search path for target visualizationMayavi
because files in some directories may conflict with libraries in implicit
directories:
runtime library [libhdf5.so.10] in /usr/lib64 may be hidden by files in:
/usr/lib64/mpi/gcc/openmpi/lib64
Some of these libraries may not be found correctly.
-- Generating done
-- Build files have been written to:
<http://espressomd.org/jenkins/job/py/ws/build>
==================================================
END CMAKE
==================================================
==================================================
START BUILD
==================================================
>make
Scanning dependencies of target myconfig
[ 0%] Built target myconfig
Scanning dependencies of target EspressoConfig
[ 1%] Generating config-features.hpp, config-features.cpp
Reading definitions from
<http://espressomd.org/jenkins/job/py/ws/src/features.def...>
Done.
Writing
<http://espressomd.org/jenkins/job/py/ws/build/src/core/config-features.hpp...>
Done.
Writing
<http://espressomd.org/jenkins/job/py/ws/build/src/core/config-features.cpp...>
Done.
[ 1%] Built target EspressoConfig
[ 1%] Building NVCC (Device) object
src/core/immersed_boundary/CMakeFiles/ImmersedBoundaryCuda.dir/ImmersedBoundaryCuda_generated_ibm_cuda.cu.o
Scanning dependencies of target ImmersedBoundaryCuda
[ 2%] Linking CXX shared library libImmersedBoundaryCuda.so
[ 2%] Built target ImmersedBoundaryCuda
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_matrix.cu.o
[ 2%] Building NVCC (Device) object
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_cuda_init_cuda.cu.o
[ 3%] Building NVCC (Device) object
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_cuda.cu.o
[ 3%] Building NVCC (Device) object
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_fd-electrostatics_cuda.cu.o
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_EspressoSystemInterface_cuda.cu.o
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_electrokinetics_cuda.cu.o
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_p3m_gpu_error_cuda.cu.o
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_p3m_gpu_cuda.cu.o
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_cuda_debug.cu.o
[ 5%] Building NVCC (Device) object
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_cuda_kernel.cu.o
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_cuda_device.cu.o
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_cuda_common_cuda.cu.o
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src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_lbgpu_cuda.cu.o
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src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_HarmonicWell_cuda.cu.o
[ 6%] Building NVCC (Device) object
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_EwaldGPU_cuda.cu.o
[ 6%] Building NVCC (Device) object
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_Mmm1dgpuForce_cuda.cu.o
[ 6%] Building NVCC (Device) object
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_HarmonicOrientationWell_cuda.cu.o
[ 7%] Building NVCC (Device) object
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_DipolarDirectSum_cuda.cu.o
Scanning dependencies of target ActorCuda
[ 7%] Linking CXX shared library libActorCuda.so
[ 7%] Built target ActorCuda
Scanning dependencies of target Actor
[ 7%] Building CXX object
src/core/actor/CMakeFiles/Actor.dir/DipolarDirectSum.cpp.o
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src/core/actor/CMakeFiles/Actor.dir/HarmonicWell.cpp.o
[ 7%] Building CXX object
src/core/actor/CMakeFiles/Actor.dir/Mmm1dgpuForce.cpp.o
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src/core/actor/CMakeFiles/Actor.dir/HarmonicOrientationWell.cpp.o
[ 8%] Building CXX object src/core/actor/CMakeFiles/Actor.dir/ActorList.cpp.o
[ 8%] Building CXX object src/core/actor/CMakeFiles/Actor.dir/EwaldGPU.cpp.o
[ 9%] Linking CXX shared library libActor.so
[ 9%] Built target Actor
Scanning dependencies of target ImmersedBoundary
[ 10%] Building CXX object
src/core/immersed_boundary/CMakeFiles/ImmersedBoundary.dir/ibm_volume_conservation.cpp.o
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src/core/immersed_boundary/CMakeFiles/ImmersedBoundary.dir/ibm_main.cpp.o
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src/core/immersed_boundary/CMakeFiles/ImmersedBoundary.dir/ibm_triel.cpp.o
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src/core/immersed_boundary/CMakeFiles/ImmersedBoundary.dir/ibm_cuda_interface.cpp.o
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[ 12%] Linking CXX shared library libImmersedBoundary.so
[ 12%] Built target ImmersedBoundary
Scanning dependencies of target ObjectInFluid
[ 12%] Building CXX object
src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/membrane_collision.cpp.o
[ 13%] Building CXX object
src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/oif_global_forces.cpp.o
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src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/oif_local_forces.cpp.o
[ 13%] Building CXX object
src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/out_direction.cpp.o
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src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/affinity.cpp.o
[ 14%] Linking CXX shared library libObjectInFluid.so
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[ 14%] Generating config-version.cpp
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[ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/lb-d3q18.cpp.o
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[ 35%] Building CXX object
src/core/CMakeFiles/EspressoCore.dir/electrokinetics.cpp.o
<http://espressomd.org/jenkins/job/py/ws/src/core/electrokinetics.cpp>:11:8:
error: ‘LB_parameters_gpu’ does not name a type
extern LB_parameters_gpu lbpar_gpu;
^
<http://espressomd.org/jenkins/job/py/ws/src/core/electrokinetics.cpp>: In
function ‘void ek_particles_add_momentum(ekfloat*)’:
<http://espressomd.org/jenkins/job/py/ws/src/core/electrokinetics.cpp>:14:18:
error: ‘lbpar_gpu’ was not declared in this scope
for(int i=0; i<lbpar_gpu.number_of_particles; i++){
^
src/core/CMakeFiles/EspressoCore.dir/build.make:1562: recipe for target
'src/core/CMakeFiles/EspressoCore.dir/electrokinetics.cpp.o' failed
make[2]: *** [src/core/CMakeFiles/EspressoCore.dir/electrokinetics.cpp.o] Error
1
CMakeFiles/Makefile2:1536: recipe for target
'src/core/CMakeFiles/EspressoCore.dir/all' failed
make[1]: *** [src/core/CMakeFiles/EspressoCore.dir/all] Error 2
Makefile:138: recipe for target 'all' failed
make: *** [all] Error 2
+ exit 1
Build step 'Execute shell' marked build as failure
Archiving artifacts