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[Espressomd-maintainer] Build failed in Jenkins: master-nightly-distchec

From: Jenkins Demon
Subject: [Espressomd-maintainer] Build failed in Jenkins: master-nightly-distcheck #383
Date: Wed, 20 Sep 2017 00:53:09 +0200 (CEST)

See <>


[Steffen.Hirschmann] Remove unnecessary variable

[...truncated 9.52 KB...]
checking for sys/socket.h... (cached) yes
checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
*         Checking for required tools and libraries            *
checking whether to use FFTW... yes
checking for libfftw3... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking for libcublas... yes
checking for cublas_v2.h... yes
checking for libcurand... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
checking for Boost headers version >= 0.0.0... yes
checking for Boost's header version... 1_61
checking for the toolset name used by Boost for mpic++... gcc48 -gcc
checking boost/mpi.hpp usability... yes
checking boost/mpi.hpp presence... yes
checking for boost/mpi.hpp... yes
checking for the Boost mpi library... yes
checking boost/archive/text_oarchive.hpp usability... yes
checking boost/archive/text_oarchive.hpp presence... yes
checking for boost/archive/text_oarchive.hpp... yes
checking for the Boost serialization library... (cached) yes
checking boost/test/unit_test.hpp usability... yes
checking boost/test/unit_test.hpp presence... yes
checking for boost/test/unit_test.hpp... yes
checking for the Boost unit_test_framework library... (cached) yes
checking whether to use MAGMA... guess
checking for library containing magma_init... no
configure: WARNING: MAGMA not found. Some features will not be available!
checking whether to use ARPACK... guess
checking for libarpack... no
configure: WARNING: could not find ARPACK library. Some features will not be 
configure: WARNING: ARPACK not found. Some features will not be available!
*                  Checking for Python                         *
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
checking whether python -B works... yes
checking whether the python interface is wanted... no
*                  Checking for Tcl/Tk                         *
checking whether to build the Tcl interface... yes
checking for libtcl8.6... yes
checking for tcl.h... yes
checking whether to use Tk... yes
*                          h5md                                *
checking whether to build with h5md support... yes
checking for libhdf5... yes
checking for hdf5.h... yes
*                   Other settings                             *
checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
*                   Creating output files                      *
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating src/core/unit_tests/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating testsuite/tcl/Makefile
config.status: creating testsuite/python/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/tcl/Makefile
config.status: creating doc/tutorials/tcl/00-building_espresso/Makefile
config.status: creating doc/tutorials/tcl/01-lennard_jones/Makefile
config.status: creating doc/tutorials/tcl/02-charged_system/Makefile
config.status: creating doc/tutorials/tcl/03-object_in_fluid/Makefile
config.status: creating doc/tutorials/tcl/04-lattice_boltzmann/Makefile
config.status: creating doc/tutorials/tcl/05-raspberry_electrophoresis/Makefile
config.status: creating doc/tutorials/tcl/06-active_matter/Makefile
config.status: creating doc/tutorials/tcl/07-electrokinetics/Makefile
config.status: creating doc/tutorials/tcl/08-visualization/Makefile
config.status: creating doc/tutorials/tcl/09-catalytic_reactions/Makefile
config.status: creating doc/
config.status: creating testsuite/tcl/
config.status: creating testsuite/python/
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
configure: WARNING: unrecognized options: --with-mpi
*                   Configuration summary                      *
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-2998-g6cbef0e
development sources     = yes

compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      =  -std=c++11
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart 
-lfftw3  -lm -ldl -lboost_mpi-mt
using debug flags       = 
using profiling flags   = 

cython complier         = 
cython preproc flags    = 

FFTW                    = yes
efence                  = no
h5md                    = yes
boost_test              = 

CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  -O3 -std c++11 --ptxas-options=-v -gencode 

Tcl version             = tcl8.6
Tk version              = none

python                  = /usr/bin/python -B
build python interface  = 

Other settings
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /group/icp/texlive/bin/x86_64-linux/pdflatex
makeindex               = /group/icp/texlive/bin/x86_64-linux/makeindex
bibtex                  = /group/icp/texlive/bin/x86_64-linux/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
* DEPRECATION WARNING: The autoconf/autotools build system     *
* will be replaced by cmake in the future.                     *
* New features are only available via cmake.                   *
+ maintainer/jenkins/
24953 (process ID) old priority 0, new priority 5
make  dist-xz dist-gzip am__post_remove_distdir='@:'
make[1]: Entering directory 
cd .; sh config/ -rd > 
if test -d "espresso-3.4-dev-2998-g6cbef0e"; then find 
"espresso-3.4-dev-2998-g6cbef0e" -type d ! -perm -200 -exec chmod u+w {} ';' && 
rm -rf "espresso-3.4-dev-2998-g6cbef0e" || { sleep 5 && rm -rf 
"espresso-3.4-dev-2998-g6cbef0e"; }; else :; fi
test -d "espresso-3.4-dev-2998-g6cbef0e" || mkdir 
 (cd config && make  top_distdir=../espresso-3.4-dev-2998-g6cbef0e 
distdir=../espresso-3.4-dev-2998-g6cbef0e/config \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
make[2]: Leaving directory 
 (cd src && make  top_distdir=../espresso-3.4-dev-2998-g6cbef0e 
distdir=../espresso-3.4-dev-2998-g6cbef0e/src \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
 (cd core && make  top_distdir=../../espresso-3.4-dev-2998-g6cbef0e 
distdir=../../espresso-3.4-dev-2998-g6cbef0e/src/core \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
  GEN      config-features.cpp
  GEN      config-version.cpp
 (cd unit_tests && make  top_distdir=../../../espresso-3.4-dev-2998-g6cbef0e 
distdir=../../../espresso-3.4-dev-2998-g6cbef0e/src/core/unit_tests \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[4]: Entering directory 
make[4]: Leaving directory 
make[3]: Leaving directory 
 (cd tcl && make  top_distdir=../../espresso-3.4-dev-2998-g6cbef0e 
distdir=../../espresso-3.4-dev-2998-g6cbef0e/src/tcl \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
make[3]: Leaving directory 
 (cd python/espressomd && make  
distdir=../../../espresso-3.4-dev-2998-g6cbef0e/src/python/espressomd \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
Makefile:782: target 'galilei.cpp' given more than once in the same rule
Makefile:785: target '' given more than once in the same rule
Makefile:789: target '' given more than once in the same rule
make[3]: *** No rule to make target '', needed by 'distdir'.  
make[3]: Leaving directory 
Makefile:548: recipe for target 'distdir' failed
make[2]: *** [distdir] Error 1
make[2]: Leaving directory 
Makefile:582: recipe for target 'distdir' failed
make[1]: *** [distdir] Error 1
make[1]: Leaving directory 
Makefile:677: recipe for target 'dist' failed
make: *** [dist] Error 2
+ exit 1
Build step 'Execute shell' marked build as failure
Archiving artifacts

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