[Gsrc-commit] trunk r5665: update bismark to 0.19.1

[Carl Hansen]

------------------------------------------------------------
revno: 5665
revision-id: address@hidden
parent: address@hidden
committer: address@hidden
branch nick: trunk
timestamp: Fri 2018-06-29 23:30:47 -0700
message:
  update bismark to 0.19.1
modified:
  pkg/bio/bismark/Makefile       makefile-20160617195624-kwz1a09vkg4le6fu-77
  pkg/bio/bismark/sha256sums     sha256sums-20160617195624-kwz1a09vkg4le6fu-78

=== modified file 'pkg/bio/bismark/Makefile'
--- a/pkg/bio/bismark/Makefile  2016-06-17 19:57:40 +0000
+++ b/pkg/bio/bismark/Makefile  2018-06-30 06:30:47 +0000
@@ -1,4 +1,5 @@
 # Copyright © 2013, 2014 Brandon Invergo <address@hidden>
+# Copyright © 2018 Carl Hansen <address@hidden>
 #
 # This file is part of GSRC.
 #
@@ -17,7 +18,7 @@
 
 NAME = Bismark
 GARNAME = bismark
-GARVERSION = 0.10.1
+GARVERSION = 0.19.1
 HOME_URL = http://www.bioinformatics.babraham.ac.uk/projects/bismark/
 DESCRIPTION = A bisulfite read mapper and methylation caller
 define BLURB
@@ -28,6 +29,7 @@
 CITE =
 
 ######################################################################
+# 
http://www.bioinformatics.babraham.ac.uk/projects/bismark/bismark_v0.19.1.tar.gz
 
 MASTER_SITES = http://www.bioinformatics.babraham.ac.uk/
 MASTER_SUBDIR = projects/$(GARNAME)/
@@ -35,6 +37,7 @@
 DISTFILES = $(DISTNAME).tar.gz
 SIGFILES = 
 INSTALL_SCRIPTS = scripts
+WORKSRC =  $(WORKDIR)/Bismark_v$(GARVERSION)
 
 BUILDDEPS =
 LIBDEPS =
@@ -54,3 +57,5 @@
        $(INSTALL_BIN) $(WORKSRC)/coverage2cytosine
        $(INSTALL_BIN) $(WORKSRC)/deduplicate_bismark
        $(MAKECOOKIE)
+
+# to do install docs...

=== modified file 'pkg/bio/bismark/sha256sums'
--- a/pkg/bio/bismark/sha256sums        2016-06-17 19:57:40 +0000
+++ b/pkg/bio/bismark/sha256sums        2018-06-30 06:30:47 +0000
@@ -1,1 +1,1 @@
-d4a8f0c559b0fe0dccc50e07159e544482496e81adcfe5627ae1f896c93082a9  
download/bismark_v0.10.1.tar.gz
+cd9018713bd4827be2e32e2531228955562863c95e3385b37fdb8063daa1e1fe  
download/bismark_v0.19.1.tar.gz