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02/02: gnu: Add HTSeq.
From: |
Ricardo Wurmus |
Subject: |
02/02: gnu: Add HTSeq. |
Date: |
Fri, 20 Feb 2015 18:32:16 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 85652f599a7a9574a26aefc4bdd36f6b6710a7c0
Author: Ricardo Wurmus <address@hidden>
Date: Fri Feb 20 16:41:50 2015 +0100
gnu: Add HTSeq.
* gnu/packages/bioinformatics.scm (htseq): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 files changed, 24 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c13e649..b64dab7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -311,6 +311,30 @@ several alignment strategies enable effective alignment of
RNA-seq reads, in
particular, reads spanning multiple exons.")
(license license:gpl3+)))
+(define-public htseq
+ (package
+ (name "htseq")
+ (version "0.6.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/H/HTSeq/HTSeq-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1i85ppf2j2lj12m0x690qq5nn17xxk23pbbx2c83r8ayb5wngzwv"))))
+ (build-system python-build-system)
+ (arguments `(#:python ,python-2)) ; only Python 2 is supported
+ (inputs
+ `(("python-numpy" ,python2-numpy)
+ ("python-setuptools" ,python2-setuptools)))
+ (home-page "http://www-huber.embl.de/users/anders/HTSeq/")
+ (synopsis "Analysing high-throughput sequencing data with Python")
+ (description
+ "HTSeq is a Python package that provides infrastructure to process data
+from high-throughput sequencing assays.")
+ (license license:gpl3+)))
+
(define-public rseqc
(package
(name "rseqc")