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01/01: gnu: Add R/qtl.
From: |
Andreas Enge |
Subject: |
01/01: gnu: Add R/qtl. |
Date: |
Sat, 19 Sep 2015 22:34:45 +0000 |
andreas pushed a commit to branch master
in repository guix.
commit a5002ae77c00693792ae0024b290cc24fb1d4328
Author: Andreas Enge <address@hidden>
Date: Sun Sep 20 00:32:45 2015 +0200
gnu: Add R/qtl.
* gnu/packages/bioinformatics.scm (r-qtl): New variable.
Co-authored-by: Pjotr Prins <address@hidden>
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 files changed, 28 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 37bd333..2e31d85 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,6 +1,8 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015 Ricardo Wurmus <address@hidden>
;;; Copyright © 2015 Ben Woodcroft <address@hidden>
+;;; Copyright © 2015 Pjotr Prins <address@hidden>
+;;; Copyright © 2015 Andreas Enge <address@hidden>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -27,6 +29,7 @@
#:use-module (guix build-system cmake)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
+ #:use-module (guix build-system r)
#:use-module (guix build-system ruby)
#:use-module (guix build-system trivial)
#:use-module (gnu packages)
@@ -2743,3 +2746,28 @@ BLAST, KEGG, GenBank, MEDLINE and GO.")
;; Code is released under Ruby license, except for setup
;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+)
(license (list license:ruby license:lgpl2.1+ license:gpl2+ ))))
+
+(define-public r-qtl
+ (package
+ (name "r-qtl")
+ (version "1.37-11")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://cran/src/contrib/qtl_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0h20d36mww7ljp51pfs66xq33yq4b4fwq9nsh02dpmfhlaxgx1xi"))))
+ (build-system r-build-system)
+ (home-page "http://rqtl.org/")
+ (synopsis "R package for analyzing QTL experiments in genetics")
+ (description "R/qtl is an extension library for the R statistics
+system. It is used to analyze experimental crosses for identifying
+genes contributing to variation in quantitative traits (so-called
+quantitative trait loci, QTLs).
+
+Using a hidden Markov model, R/qtl allows to estimate genetic maps, to
+identify genotyping errors, and to perform single-QTL and two-QTL,
+two-dimensional genome scans.")
+ (license license:gpl3)))