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14/21: gnu: Add bpp-seq.
From: |
Ben Woodcroft |
Subject: |
14/21: gnu: Add bpp-seq. |
Date: |
Mon, 8 Aug 2016 12:08:59 +0000 (UTC) |
benwoodcroft pushed a commit to branch master
in repository guix.
commit 70f1bc051a5e06e14acde6cfe8fcaace656adbf4
Author: Ben Woodcroft <address@hidden>
Date: Tue Jul 12 15:59:52 2016 +1000
gnu: Add bpp-seq.
* gnu/packages/bioinformatics.scm (bpp-seq): New variable.
---
gnu/packages/bioinformatics.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8b86e52..7a6c144 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -555,6 +555,40 @@ Bio++ intends to help programmers to write computer
expensive programs, by
providing them a set of re-usable tools.")
(license license:cecill-c))))
+(define-public bpp-seq
+ ;; The last release was in 2014 and the recommended way to install from
source
+ ;; is to clone the git repository, so we do this.
+ ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
+ (let ((commit "6cfa07965ce152e5598a89df2fa80a75973bfa33"))
+ (package
+ (name "bpp-seq")
+ (version (string-append "2.2.0-1." (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "http://biopp.univ-montp2.fr/git/bpp-seq")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "1nys5jq7jqvdg40d91wsmj3q2yzy4276cp7sp44n67p468f27zf2"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:parallel-build? #f
+ ;; If out-of-source, test data is not copied into the build directory
+ ;; so the tests fail.
+ #:out-of-source? #f))
+ (inputs
+ `(("bpp-core" ,bpp-core)
+ ("gcc" ,gcc-5))) ; Use GCC 5 as per 'bpp-core'.
+ (home-page "http://biopp.univ-montp2.fr")
+ (synopsis "Bio++ sequence library")
+ (description
+ "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
+analysis, phylogenetics, molecular evolution and population genetics. This
+library provides sequence-related modules.")
+ (license license:cecill-c))))
+
(define-public blast+
(package
(name "blast+")
- 20/21: gnu: Add raxml., (continued)
- 20/21: gnu: Add raxml., Ben Woodcroft, 2016/08/08
- 21/21: gnu: Add roary., Ben Woodcroft, 2016/08/08
- 16/21: gnu: Add bpp-popgen., Ben Woodcroft, 2016/08/08
- 08/21: gnu: Add perl-file-grep., Ben Woodcroft, 2016/08/08
- 18/21: gnu: Add exonerate., Ben Woodcroft, 2016/08/08
- 01/21: gnu: parallel: Use full paths for executables., Ben Woodcroft, 2016/08/08
- 09/21: gnu: Add perl-array-utils., Ben Woodcroft, 2016/08/08
- 10/21: gnu: Add perl-test-files., Ben Woodcroft, 2016/08/08
- 11/21: gnu: Add perl-env-path., Ben Woodcroft, 2016/08/08
- 13/21: gnu: Add bpp-core., Ben Woodcroft, 2016/08/08
- 14/21: gnu: Add bpp-seq.,
Ben Woodcroft <=
- 19/21: gnu: Add prank., Ben Woodcroft, 2016/08/08