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92/155: gnu: cutadapt: Update to 1.12.
From: |
John Darrington |
Subject: |
92/155: gnu: cutadapt: Update to 1.12. |
Date: |
Wed, 21 Dec 2016 20:48:36 +0000 (UTC) |
jmd pushed a commit to branch wip-installer
in repository guix.
commit c7514ecb7bb4e858f2fe2a6f09355424e9fc1528
Author: Tobias Geerinckx-Rice <address@hidden>
Date: Thu Dec 15 11:16:46 2016 +0100
gnu: cutadapt: Update to 1.12.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.12.
[inputs]: Add python-xopen.
---
gnu/packages/bioinformatics.scm | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 122205f..f363936 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1804,7 +1804,7 @@ preparation protocols.")
(define-public cutadapt
(package
(name "cutadapt")
- (version "1.8")
+ (version "1.12")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1813,7 +1813,7 @@ preparation protocols.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "161bp87y6gd6r5bmvjpn2b1k942i3fizfpa139f0jn6jv1wcp5h5"))))
+ "19smhh6444ikn4jlmyhvffw4m5aw7yg07rqsk7arg8dkwyga1i4v"))))
(build-system python-build-system)
(arguments
;; tests must be run after install
@@ -1830,6 +1830,8 @@ preparation protocols.")
"/site-packages"))
(zero? (system* "nosetests" "-P" "tests")))
(alist-delete 'check %standard-phases))))
+ (inputs
+ `(("python-xopen" ,python-xopen)))
(native-inputs
`(("python-cython" ,python-cython)
("python-nose" ,python-nose)))
- 33/155: doc: Update dot graphs., (continued)
- 33/155: doc: Update dot graphs., John Darrington, 2016/12/21
- 142/155: gnu: linux-libre: Avoid invalid "kconfig" input on armhf and mips64el., John Darrington, 2016/12/21
- 113/155: gnu: hunspell: Update to 1.5.4., John Darrington, 2016/12/21
- 114/155: gnu: hunspell: Add missing perl dependency., John Darrington, 2016/12/21
- 131/155: import: github: Use 'json-fetch'., John Darrington, 2016/12/21
- 151/155: Revert "gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586, 9952, 9953}].", John Darrington, 2016/12/21
- 77/155: nls: Update 'pt_BR' translation., John Darrington, 2016/12/21
- 79/155: nls: Update 'fr' translation., John Darrington, 2016/12/21
- 76/155: nls: Update 'da' translation., John Darrington, 2016/12/21
- 86/155: gexp: Native inputs of nested gexps are properly accounted for., John Darrington, 2016/12/21
- 92/155: gnu: cutadapt: Update to 1.12.,
John Darrington <=
- 107/155: gnu: tor: Update to 0.2.9.8., John Darrington, 2016/12/21
- 112/155: gnu: Add Ancient Greek Aspell dictionary., John Darrington, 2016/12/21
- 74/155: gnu: hurd-headers: Update to 0.9., John Darrington, 2016/12/21
- 118/155: services: cuirass: Create the database directory., John Darrington, 2016/12/21
- 138/155: gnu: mutt: Update to 1.7.2., John Darrington, 2016/12/21
- 145/155: gnu: curl: Update replacement to 7.52.0 [fixes CVE-2016-{9586, 9952, 9953}]., John Darrington, 2016/12/21
- 78/155: nls: Update 'da' package translation., John Darrington, 2016/12/21