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17/30: gnu: Add r-hardyweinberg.
From: |
Ricardo Wurmus |
Subject: |
17/30: gnu: Add r-hardyweinberg. |
Date: |
Tue, 7 Nov 2017 17:32:58 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 7fd5f60b8f1930bc4828ccb76b8f0a7a53527c33
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 16:16:29 2017 +0100
gnu: Add r-hardyweinberg.
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
---
gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 97efca3..41eb559 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1349,3 +1349,34 @@ Various diagnostic plots are available to inspect the
quality of the
imputations.")
;; Any of these two versions.
(license (list license:gpl2 license:gpl3))))
+
+(define-public r-hardyweinberg
+ (package
+ (name "r-hardyweinberg")
+ (version "1.5.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "HardyWeinberg" version))
+ (sha256
+ (base32
+ "0xbcchmzii0jv0ygr91n72r39j1axraxd2i607b56v4yd5d8sy4k"))))
+ (properties `((upstream-name . "HardyWeinberg")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mice" ,r-mice)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://cran.r-project.org/package=HardyWeinberg")
+ (synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium")
+ (description
+ "This package contains tools for exploring Hardy-Weinberg equilibrium for
+diallelic genetic marker data. All classical tests (chi-square, exact,
+likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are
+included in the package, as well as functions for power computation and for
+the simulation of marker data under equilibrium and disequilibrium. Routines
+for dealing with markers on the X-chromosome are included. Functions for
+testing equilibrium in the presence of missing data by using multiple
+imputation are also provided. Implements several graphics for exploring the
+equilibrium status of a large set of diallelic markers: ternary plots with
+acceptance regions, log-ratio plots and Q-Q plots.")
+ (license license:gpl2+)))
- 13/30: gnu: Add r-homo-sapiens., (continued)
- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock., Ricardo Wurmus, 2017/11/07
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07
- 18/30: gnu: Add r-gqtlstats., Ricardo Wurmus, 2017/11/07
- 19/30: gnu: Add r-gviz., Ricardo Wurmus, 2017/11/07
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- 14/30: gnu: Add r-erma., Ricardo Wurmus, 2017/11/07
- 17/30: gnu: Add r-hardyweinberg.,
Ricardo Wurmus <=
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