01/01: gnu: bismark: Patch bismark2report before installing.

[Ricardo Wurmus]

rekado pushed a commit to branch master
in repository guix.

commit 0f5ad3a1bcdc20062ee3966296c5dcb99d0be6e9
Author: Ricardo Wurmus <address@hidden>
Date:   Tue May 22 16:05:41 2018 +0200

    gnu: bismark: Patch bismark2report before installing.
    
    * gnu/packages/bioinformatics.scm (bismark)[arguments]: Patch file before
    installing it.
---
 gnu/packages/bioinformatics.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a6d28be..17b7366 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11624,6 +11624,9 @@ Browser.")
                                "filter_non_conversion"
                                "bam2nuc"
                                "bismark2summary")))
+               (substitute* "bismark2report"
+                 (("\\$RealBin/bismark_sitrep")
+                  (string-append share "/bismark_sitrep")))
                (mkdir-p share)
                (mkdir-p docdir)
                (mkdir-p bin)
@@ -11632,10 +11635,6 @@ Browser.")
                (for-each (lambda (file) (install-file file docdir))
                          docs)
                (copy-recursively "Docs/Images" (string-append docdir 
"/Images"))
-
-               (substitute* "bismark2report"
-                 (("\\$RealBin/bismark_sitrep")
-                  (string-append share "/bismark_sitrep")))
                (copy-recursively "bismark_sitrep"
                                  (string-append share "/bismark_sitrep"))