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01/01: Merge branch 'staging' into core-updates
|
From: |
Marius Bakke |
|
Subject: |
01/01: Merge branch 'staging' into core-updates |
|
Date: |
Sat, 25 Aug 2018 10:54:26 -0400 (EDT) |
mbakke pushed a commit to branch core-updates
in repository guix.
commit 839167ff9d74fc490b32f6a197591964f73b65e5
Merge: 27c1df0 030c912
Author: Marius Bakke <address@hidden>
Date: Sat Aug 25 16:44:07 2018 +0200
Merge branch 'staging' into core-updates
Makefile.am | 10 +-
doc/guix.fr.texi | 4270 +-
doc/guix.texi | 74 +-
gnu/build/linux-modules.scm | 10 +-
gnu/local.mk | 21 +-
gnu/packages/admin.scm | 162 +-
gnu/packages/algebra.scm | 61 +-
gnu/packages/astronomy.scm | 7 +-
gnu/packages/audio.scm | 59 +-
gnu/packages/authentication.scm | 77 +
.../linux-libre/{4.17-arm.conf => 4.18-arm.conf} | 252 +-
.../{4.17-arm64.conf => 4.18-arm64.conf} | 270 +-
.../linux-libre/{4.17-i686.conf => 4.18-i686.conf} | 271 +-
.../{4.17-x86_64.conf => 4.18-x86_64.conf} | 284 +-
gnu/packages/backup.scm | 53 +-
gnu/packages/bioconductor.scm | 37 +
gnu/packages/bioinformatics.scm | 157 +-
gnu/packages/bittorrent.scm | 58 +-
gnu/packages/boost.scm | 16 +
gnu/packages/bootloaders.scm | 8 +-
gnu/packages/calendar.scm | 4 +-
gnu/packages/cdrom.scm | 10 +-
gnu/packages/ci.scm | 6 +-
gnu/packages/code.scm | 8 +-
gnu/packages/compression.scm | 26 +-
gnu/packages/cpp.scm | 15 +-
gnu/packages/cran.scm | 365 +-
gnu/packages/crypto.scm | 14 +-
gnu/packages/databases.scm | 170 +-
gnu/packages/dictionaries.scm | 9 +-
gnu/packages/disk.scm | 33 +-
gnu/packages/django.scm | 4 +-
gnu/packages/dns.scm | 43 +-
gnu/packages/elixir.scm | 2 +-
gnu/packages/emacs.scm | 30 +-
gnu/packages/emulators.scm | 15 +-
gnu/packages/engineering.scm | 16 +-
gnu/packages/erlang.scm | 16 +-
gnu/packages/fonts.scm | 9 +-
gnu/packages/fontutils.scm | 27 +-
gnu/packages/freedesktop.scm | 18 +-
gnu/packages/game-development.scm | 4 +-
gnu/packages/games.scm | 64 +-
gnu/packages/gcc.scm | 1 +
gnu/packages/gd.scm | 4 +-
gnu/packages/gdb.scm | 4 +-
gnu/packages/gettext.scm | 54 +-
gnu/packages/gimp.scm | 23 +-
gnu/packages/gl.scm | 2 +-
gnu/packages/glib.scm | 10 +-
gnu/packages/gnome.scm | 31 +-
gnu/packages/gnupg.scm | 36 +-
gnu/packages/gstreamer.scm | 10 +-
gnu/packages/gtk.scm | 18 +-
gnu/packages/guile.scm | 61 +-
gnu/packages/haskell-check.scm | 89 +-
gnu/packages/haskell-web.scm | 109 +-
gnu/packages/haskell.scm | 472 +-
gnu/packages/image.scm | 7 +-
gnu/packages/imagemagick.scm | 10 +-
gnu/packages/language.scm | 40 +-
gnu/packages/libevent.scm | 9 +-
gnu/packages/libusb.scm | 10 +-
gnu/packages/license.scm | 19 +-
gnu/packages/lighting.scm | 4 +-
gnu/packages/linux.scm | 131 +-
gnu/packages/mail.scm | 48 +-
gnu/packages/markup.scm | 9 +-
gnu/packages/marst.scm | 2 +-
gnu/packages/maths.scm | 37 +-
gnu/packages/mes.scm | 21 +-
gnu/packages/messaging.scm | 4 +-
gnu/packages/mp3.scm | 4 +-
gnu/packages/mpd.scm | 16 +-
gnu/packages/music.scm | 107 +-
gnu/packages/ncurses.scm | 8 +-
gnu/packages/networking.scm | 225 +-
gnu/packages/ntp.scm | 4 +-
gnu/packages/openldap.scm | 200 +-
gnu/packages/parallel.scm | 4 +-
gnu/packages/password-utils.scm | 131 +-
.../patches/aegisub-icu59-include-unistr.patch | 12 +
.../patches/btrfs-progs-e-value-block.patch | 37 -
gnu/packages/patches/byobu-writable-status.patch | 10 +-
gnu/packages/patches/clementine-fix-sqlite.patch | 23 +
gnu/packages/patches/eigen-arm-neon-fixes.patch | 245 -
.../patches/extundelete-e2fsprogs-1.44.patch | 23 +
.../patches/gcc-4.8-libsanitizer-fix.patch | 15 +
gnu/packages/patches/gdm-CVE-2018-14424.patch | 172 +
gnu/packages/patches/lxc-CVE-2018-6556.patch | 116 -
.../patches/openssl-1.1.0-CVE-2018-0495.patch | 152 -
.../patches/openssl-1.1.0-CVE-2018-0732.patch | 50 -
.../patches/perl-dbd-mysql-CVE-2017-10788.patch | 62 -
gnu/packages/patches/qemu-CVE-2018-11806.patch | 105 -
gnu/packages/patches/qtoctave-qt-5.11-fix.patch | 26 -
gnu/packages/patches/racket-fix-xform-issue.patch | 63 -
.../patches/racket-store-checksum-override.patch | 49 +
.../patches/soundtouch-CVE-2018-1000223.patch | 143 +
.../patches/soundtouch-CVE-2018-14044-14045.patch | 138 +
.../patches/translate-shell-fix-curl-tests.patch | 60 -
gnu/packages/pdf.scm | 8 +-
gnu/packages/perl-check.scm | 107 +-
gnu/packages/perl.scm | 779 +-
gnu/packages/photo.scm | 2 +-
gnu/packages/plotutils.scm | 16 +-
gnu/packages/profiling.scm | 17 +-
gnu/packages/protobuf.scm | 4 +-
gnu/packages/python-crypto.scm | 4 +-
gnu/packages/python-web.scm | 32 +-
gnu/packages/python.scm | 90 +-
gnu/packages/rdf.scm | 4 +-
gnu/packages/samba.scm | 4 +-
gnu/packages/scheme.scm | 44 +-
gnu/packages/screen.scm | 12 +-
gnu/packages/security-token.scm | 28 +-
gnu/packages/shells.scm | 4 +-
gnu/packages/skarnet.scm | 58 +-
gnu/packages/spice.scm | 8 +-
gnu/packages/ssh.scm | 13 +-
gnu/packages/statistics.scm | 92 +-
gnu/packages/syncthing.scm | 4 +-
gnu/packages/tcl.scm | 2 +-
gnu/packages/tex.scm | 125 +-
gnu/packages/tls.scm | 24 +-
gnu/packages/toys.scm | 15 +-
gnu/packages/version-control.scm | 51 +-
gnu/packages/video.scm | 26 +-
gnu/packages/virtualization.scm | 10 +-
gnu/packages/web-browsers.scm | 4 +-
gnu/packages/web.scm | 320 +-
gnu/packages/webkit.scm | 4 +-
gnu/packages/wine.scm | 52 +-
gnu/packages/wm.scm | 11 +-
gnu/packages/xdisorg.scm | 16 +-
gnu/packages/xfig.scm | 4 +-
gnu/packages/xml.scm | 66 +-
gnu/packages/xorg.scm | 26 +-
gnu/services/cgit.scm | 13 +-
gnu/services/cuirass.scm | 4 +-
gnu/services/databases.scm | 9 +-
gnu/services/messaging.scm | 9 +-
gnu/services/security-token.scm | 93 +
gnu/services/web.scm | 11 +-
gnu/tests/security-token.scm | 71 +
guix/build-system/asdf.scm | 2 +-
guix/build/debug-link.scm | 210 +
guix/build/graft.scm | 31 +-
guix/build/svn.scm | 2 +-
guix/grafts.scm | 17 +-
guix/import/cpan.scm | 4 +-
guix/import/github.scm | 92 +-
guix/import/hackage.scm | 124 +-
guix/import/json.scm | 14 +-
guix/inferior.scm | 5 +-
guix/scripts/import/hackage.scm | 37 +-
po/doc/guix-manual.fr.po | 2077 +-
po/guix/da.po | 774 +-
po/guix/de.po | 2927 +-
po/guix/fr.po | 42598 +++++++++++++++++--
tests/cpan.scm | 2 +-
tests/debug-link.scm | 158 +
tests/gremlin.scm | 4 +-
162 files changed, 51498 insertions(+), 10416 deletions(-)
diff --cc gnu/local.mk
index e98973b,60db25a..aac3a66
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -641,9 -646,9 +645,8 @@@ dist_patch_DATA =
%D%/packages/patches/doc++-include-directives.patch \
%D%/packages/patches/doc++-segfault-fix.patch \
%D%/packages/patches/dovecot-trees-support-dovecot-2.3.patch \
- %D%/packages/patches/doxygen-gcc-ice.patch \
%D%/packages/patches/doxygen-test.patch \
%D%/packages/patches/dvd+rw-tools-add-include.patch \
- %D%/packages/patches/eigen-arm-neon-fixes.patch \
%D%/packages/patches/elfutils-tests-ptrace.patch \
%D%/packages/patches/elogind-glibc-2.27.patch \
%D%/packages/patches/einstein-build.patch \
@@@ -690,9 -695,9 +694,10 @@@
%D%/packages/patches/gcc-asan-missing-include.patch \
%D%/packages/patches/gcc-cross-environment-variables.patch \
%D%/packages/patches/gcc-fix-texi2pod.patch \
+ %D%/packages/patches/gcc-4.8-libsanitizer-fix.patch \
%D%/packages/patches/gcc-4.9-libsanitizer-fix.patch \
%D%/packages/patches/gcc-libsanitizer-fix.patch \
+ %D%/packages/patches/gcc-libsanitizer-ustat.patch \
%D%/packages/patches/gcc-libvtv-runpath.patch \
%D%/packages/patches/gcc-strmov-store-file-names.patch \
%D%/packages/patches/gcc-4-compile-with-gcc-5.patch \
@@@ -711,7 -716,7 +716,8 @@@
%D%/packages/patches/gd-CVE-2018-5711.patch \
%D%/packages/patches/gd-fix-tests-on-i686.patch \
%D%/packages/patches/gd-freetype-test-failure.patch \
+ %D%/packages/patches/gdb-python-3.7.patch \
+ %D%/packages/patches/gdm-CVE-2018-14424.patch \
%D%/packages/patches/gemma-intel-compat.patch \
%D%/packages/patches/geoclue-config.patch \
%D%/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch \
@@@ -1011,8 -1013,10 +1014,7 @@@
%D%/packages/patches/patchelf-rework-for-arm.patch \
%D%/packages/patches/patchutils-xfail-gendiff-tests.patch \
%D%/packages/patches/patch-hurd-path-max.patch \
- %D%/packages/patches/perf-gcc-ice.patch \
- %D%/packages/patches/perl-archive-tar-CVE-2018-12015.patch \
- %D%/packages/patches/perl-file-path-CVE-2017-6512.patch \
%D%/packages/patches/perl-autosplit-default-time.patch \
- %D%/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch \
%D%/packages/patches/perl-deterministic-ordering.patch \
%D%/packages/patches/perl-finance-quote-unuse-mozilla-ca.patch \
%D%/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch \
diff --cc gnu/packages/fontutils.scm
index f9e117b,30143eb..69e35cd
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@@ -6,8 -6,7 +6,8 @@@
;;; Copyright © 2017 Rene Saavedra <address@hidden>
;;; Copyright © 2017 Leo Famulari <address@hidden>
;;; Copyright © 2017 Nils Gillmann <address@hidden>
- ;;; Copyright © 2017 Tobias Geerinckx-Rice <address@hidden>
+ ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <address@hidden>
+;;; Copyright © 2018 Ricardo Wurmus <address@hidden>
;;;
;;; This file is part of GNU Guix.
;;;
diff --cc gnu/packages/gdb.scm
index 4c47cc5,f0c4c8b..d7b1946
--- a/gnu/packages/gdb.scm
+++ b/gnu/packages/gdb.scm
@@@ -42,10 -42,9 +42,10 @@@
(method url-fetch)
(uri (string-append "mirror://gnu/gdb/gdb-"
version ".tar.xz"))
+ (patches (search-patches "gdb-python-3.7.patch"))
(sha256
(base32
- "0d2bpqk58fqlx21rbnk8mbcjlggzc9kb5sjirrfrrrjq70ka0qdg"))))
+ "0g6hv9xk12aa58w77fydaldqr9a6b0a6bnwsq87jfc6lkcbc7p4p"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; FIXME "make check" fails on single-processor systems.
diff --cc gnu/packages/python.scm
index 8c5e089,3c46102..244faa2
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@@ -2740,12 -2845,26 +2740,30 @@@ and is very extensible."
(add-before 'check 'set-HOME
;; some tests require access to "$HOME/.cython"
(lambda _ (setenv "HOME" "/tmp") #t))
+
+ ;; FIXME: These tests started failing on armhf after the 0.28 update
+ ;; (commit c69d11c5930), both with an error such as this:
+ ;; compiling (cpp) and running dictcomp ...
+ ;; === C/C++ compiler error output: ===
+ ;; ‘
+ ;; dictcomp.cpp:5221: confused by earlier errors, bailing out
+ ;; See <https://hydra.gnu.org/build/2948724> for logs.
+ ,@(if (target-arm32?)
+ `((add-before 'check 'disable-failing-tests
+ (lambda _
+ (let ((disabled-tests (open-file "tests/bugs.txt" "a")))
+ (for-each (lambda (test)
+ (format disabled-tests "~a\n" test))
+ '("memslice" "dictcomp"))
+ (close-port disabled-tests)))))
+ '())
+
(replace 'check
- (lambda _ (invoke "python" "runtests.py" "-vv"))))))
+ (lambda _
+ ;; The "with_outer_raising" test fails with Python 3.7. See
+ ;; https://github.com/cython/cython/issues/2454
+ (delete-file "tests/run/generators_py.py")
+ (invoke "python" "runtests.py" "-vv"))))))
(home-page "http://cython.org/";)
(synopsis "C extensions for Python")
(description "Cython is an optimising static compiler for both the Python
diff --cc gnu/packages/tex.scm
index 98fc9f0,6ab999b..ed85950
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@@ -6,10 -6,10 +6,10 @@@
;;; Copyright © 2016, 2018 Efraim Flashner <address@hidden>
;;; Copyright © 2016 Federico Beffa <address@hidden>
;;; Copyright © 2016 Thomas Danckaert <address@hidden>
-;;; Copyright © 2016, 2017 Ricardo Wurmus <address@hidden>
+;;; Copyright © 2016, 2017, 2018 Ricardo Wurmus <address@hidden>
;;; Copyright © 2017 Leo Famulari <address@hidden>
;;; Copyright © 2017 Marius Bakke <address@hidden>
- ;;; Copyright © 2017 Tobias Geerinckx-Rice <address@hidden>
+ ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <address@hidden>
;;; Copyright © 2018 Danny Milosavljevic <address@hidden>
;;; Copyright © 2018 Arun Isaac <address@hidden>
;;;