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150/151: gnu: r-rhdf5lib: Update to 1.4.0.
From: |
Ricardo Wurmus |
Subject: |
150/151: gnu: r-rhdf5lib: Update to 1.4.0. |
Date: |
Wed, 7 Nov 2018 06:29:03 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 37200dbcc37ac210609f1452e14c9ba0a98a97ee
Author: Ricardo Wurmus <address@hidden>
Date: Wed Nov 7 12:24:12 2018 +0100
gnu: r-rhdf5lib: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.0.
[source]: Add snippet to remove bundled binaries.
[arguments]: Replace references to hdf5 with references to hdf5-1.10.
[native-inputs]: Likewise.
[propagated-inputs]: Replace hdf5 with hdf5-1.10.
---
gnu/packages/bioinformatics.scm | 16 +++++++++++-----
1 file changed, 11 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 213c5c8..9f2dd6c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10830,14 +10830,20 @@ block processing.")
(define-public r-rhdf5lib
(package
(name "r-rhdf5lib")
- (version "1.2.1")
+ (version "1.4.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rhdf5lib" version))
(sha256
(base32
- "1y59acac6v8hrhv84gghn9ifsni9xxxacaj177rrl4frmkrz4x3c"))))
+ "01gpz780g850ql20b2ql6pvr678ydk4nq4sn5iiih94a4crb9lz1"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; Delete bundled binaries
+ (delete-file-recursively "src/winlib/")
+ #t))))
(properties `((upstream-name . "Rhdf5lib")))
(build-system r-build-system)
(arguments
@@ -10854,7 +10860,7 @@ block processing.")
"'%s/libhdf5.a %s/libhdf5.a -lz'"))
(with-directory-excursion "src"
(invoke "tar" "xvf" (assoc-ref inputs "hdf5-source"))
- (rename-file (string-append "hdf5-" ,(package-version hdf5))
+ (rename-file (string-append "hdf5-" ,(package-version
hdf5-1.10))
"hdf5")
;; Remove timestamp and host system information to make
;; the build reproducible.
@@ -10883,9 +10889,9 @@ block processing.")
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
- `(("hdf5" ,hdf5)))
+ `(("hdf5" ,hdf5-1.10)))
(native-inputs
- `(("hdf5-source" ,(package-source hdf5))))
+ `(("hdf5-source" ,(package-source hdf5-1.10))))
(home-page "https://bioconductor.org/packages/Rhdf5lib")
(synopsis "HDF5 library as an R package")
(description "This package provides C and C++ HDF5 libraries for use in R
- 137/151: gnu: r-gwascat: Update to 2.14.0., (continued)
- 137/151: gnu: r-gwascat: Update to 2.14.0., Ricardo Wurmus, 2018/11/07
- 124/151: gnu: r-genomicfiles: Update to 1.18.0., Ricardo Wurmus, 2018/11/07
- 140/151: gnu: r-hitc: Update to 1.26.0., Ricardo Wurmus, 2018/11/07
- 151/151: gnu: r-mzr: Update to 2.16.0., Ricardo Wurmus, 2018/11/07
- 136/151: gnu: r-gviz: Update to 1.26.0., Ricardo Wurmus, 2018/11/07
- 141/151: gnu: r-qvalue: Update to 2.14.0., Ricardo Wurmus, 2018/11/07
- 149/151: gnu: r-hdf5array: Update to 1.10.0., Ricardo Wurmus, 2018/11/07
- 127/151: gnu: r-ensembldb: Update to 2.6.0., Ricardo Wurmus, 2018/11/07
- 129/151: gnu: r-biovizbase: Update to 1.30.0., Ricardo Wurmus, 2018/11/07
- 148/151: gnu: r-rhdf5: Update to 2.26.0., Ricardo Wurmus, 2018/11/07
- 150/151: gnu: r-rhdf5lib: Update to 1.4.0.,
Ricardo Wurmus <=
- 110/151: gnu: r-affy: Update to 1.60.0., Ricardo Wurmus, 2018/11/07
- 131/151: gnu: r-gqtlbase: Update to 1.14.0., Ricardo Wurmus, 2018/11/07
- 132/151: gnu: r-snpstats: Update to 1.32.0., Ricardo Wurmus, 2018/11/07
- 115/151: gnu: r-msnid: Update to 1.16.0., Ricardo Wurmus, 2018/11/07
- 106/151: gnu: r-methylkit: Update to 1.8.0., Ricardo Wurmus, 2018/11/07
- 57/151: gnu: r-dexseq: Update to 1.28.0., Ricardo Wurmus, 2018/11/07
- 63/151: gnu: r-shortread: Update to 1.40.0., Ricardo Wurmus, 2018/11/07
- 78/151: gnu: r-xvector: Update to 0.22.0., Ricardo Wurmus, 2018/11/07
- 72/151: gnu: r-s4vectors: Update to 0.20.0., Ricardo Wurmus, 2018/11/07
- 98/151: gnu: r-zlibbioc: Update to 1.28.0., Ricardo Wurmus, 2018/11/07