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06/14: gnu: seqtk: Update to 1.3.


From: Ricardo Wurmus
Subject: 06/14: gnu: seqtk: Update to 1.3.
Date: Wed, 7 Nov 2018 17:17:48 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 63f3255e13be8d1352031c78a37131c2c6644bdb
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Nov 7 22:34:41 2018 +0100

    gnu: seqtk: Update to 1.3.
    
    * gnu/packages/bioinformatics.scm (seqtk): Update to 1.3.
    [source]: Remove outdated snippet.
    [arguments]: Use INVOKE and return #T unconditionally.
---
 gnu/packages/bioinformatics.scm | 17 +++++------------
 1 file changed, 5 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b98be8e..670bea5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5868,7 +5868,7 @@ is one that takes arguments.")
 (define-public seqtk
   (package
     (name "seqtk")
-    (version "1.2")
+    (version "1.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -5877,15 +5877,7 @@ is one that takes arguments.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1mdkgmzdy734a0na9hxbl4k41jjkm87bvjbm7bdbh50fsra86f93"))
-              (modules '((guix build utils)))
-              (snippet
-               '(begin
-                  ;; Remove extraneous header files, as is done in the seqtk
-                  ;; master branch.
-                  (for-each (lambda (file) (delete-file file))
-                            (list "ksort.h" "kstring.h" "kvec.h"))
-                  #t))))
+                "1bfzlqa84b5s1qi22blmmw2s8xdyp9h9ydcq22pfjhh5gab3yz6l"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -5893,11 +5885,12 @@ is one that takes arguments.")
          (delete 'configure)
          (replace 'check
            ;; There are no tests, so we just run a sanity check.
-           (lambda _ (zero? (system* "./seqtk" "seq"))))
+           (lambda _ (invoke "./seqtk" "seq") #t))
          (replace 'install
            (lambda* (#:key outputs #:allow-other-keys)
              (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
-               (install-file "seqtk" bin)))))))
+               (install-file "seqtk" bin)
+               #t))))))
     (inputs
      `(("zlib" ,zlib)))
     (home-page "https://github.com/lh3/seqtk";)



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