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01/01: Merge branch 'master' into core-updates
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From: |
Marius Bakke |
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Subject: |
01/01: Merge branch 'master' into core-updates |
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Date: |
Wed, 14 Nov 2018 15:30:50 -0500 (EST) |
mbakke pushed a commit to branch core-updates
in repository guix.
commit 79ee97a144aaaa890be0724aaf796e2a771179d7
Merge: 7d9d521 e921993
Author: Marius Bakke <address@hidden>
Date: Wed Nov 14 21:20:46 2018 +0100
Merge branch 'master' into core-updates
doc/guix.texi | 47 +-
gnu/local.mk | 2 +-
gnu/packages/admin.scm | 4 +-
gnu/packages/audio.scm | 192 +++---
gnu/packages/backup.scm | 19 +-
gnu/packages/bioconductor.scm | 61 ++
gnu/packages/bioinformatics.scm | 127 +++-
gnu/packages/compression.scm | 27 +-
gnu/packages/cran.scm | 451 +++++++++++++-
gnu/packages/crypto.scm | 53 +-
gnu/packages/databases.scm | 21 +-
gnu/packages/datastructures.scm | 24 +
gnu/packages/emacs.scm | 32 +-
gnu/packages/embedded.scm | 13 +-
gnu/packages/game-development.scm | 11 +-
gnu/packages/geo.scm | 4 +-
gnu/packages/gnustep.scm | 19 +-
gnu/packages/gnuzilla.scm | 78 +--
gnu/packages/golang.scm | 49 +-
gnu/packages/gtk.scm | 8 +-
gnu/packages/guile.scm | 74 ++-
gnu/packages/ibus.scm | 683 +++++++++++++++++-----
gnu/packages/image-viewers.scm | 4 +-
gnu/packages/imagemagick.scm | 5 +-
gnu/packages/linux.scm | 49 +-
gnu/packages/llvm.scm | 23 +-
gnu/packages/lxde.scm | 9 +-
gnu/packages/mail.scm | 52 +-
gnu/packages/messaging.scm | 62 +-
gnu/packages/mtools.scm | 6 +-
gnu/packages/music.scm | 126 ++--
gnu/packages/nano.scm | 4 +-
gnu/packages/package-management.scm | 6 +-
gnu/packages/patches/icecat-CVE-2018-12383.patch | 103 ----
gnu/packages/patches/poppler-CVE-2018-19149.patch | 80 +++
gnu/packages/pdf.scm | 34 +-
gnu/packages/php.scm | 9 +-
gnu/packages/python.scm | 19 +
gnu/packages/rdf.scm | 20 +-
gnu/packages/samba.scm | 5 +-
gnu/packages/serialization.scm | 8 -
gnu/packages/shells.scm | 7 +-
gnu/packages/shellutils.scm | 5 +-
gnu/packages/spice.scm | 2 +-
gnu/packages/ssh.scm | 8 +-
gnu/packages/statistics.scm | 50 +-
gnu/packages/syncthing.scm | 31 +-
gnu/packages/telephony.scm | 21 +-
gnu/packages/textutils.scm | 51 +-
gnu/packages/tls.scm | 6 +-
gnu/packages/tor.scm | 9 +-
gnu/packages/video.scm | 4 +-
gnu/packages/vim.scm | 4 +-
gnu/packages/web.scm | 6 +-
gnu/packages/webkit.scm | 46 +-
gnu/packages/wine.scm | 6 +-
gnu/packages/xdisorg.scm | 16 +-
gnu/packages/xorg.scm | 4 +-
gnu/services/base.scm | 54 +-
gnu/services/mail.scm | 51 +-
gnu/services/mcron.scm | 2 +-
gnu/tests/base.scm | 14 +
guix/build/go-build-system.scm | 3 +
guix/ci.scm | 74 ++-
guix/gexp.scm | 7 +-
guix/gnu-maintenance.scm | 115 +++-
guix/grafts.scm | 8 +-
guix/nar.scm | 13 +-
guix/scripts/package.scm | 10 +-
guix/scripts/system.scm | 7 +
guix/store.scm | 68 ++-
guix/store/database.scm | 6 +
guix/store/deduplication.scm | 12 +-
guix/tests.scm | 34 ++
tests/challenge.scm | 8 -
tests/debug-link.scm | 8 -
tests/gexp.scm | 5 -
tests/guix-package.sh | 4 +
tests/nar.scm | 47 +-
tests/profiles.scm | 11 -
tests/size.scm | 8 -
81 files changed, 2463 insertions(+), 1005 deletions(-)
diff --cc gnu/packages/guile.scm
index a77cacf,c41c274..f3eb2dc
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@@ -2244,6 -2273,60 +2230,60 @@@ using S-expressions."
tracker's SOAP service, such as @url{https://bugs.gnu.org}.";)
(license license:gpl3+)))
+ (define-public guile-email
+ (let ((commit "fa52eac55e5946db89621a6c583d2aa357864dee")
+ (revision "1"))
+ (package
+ (name "guile-email")
+ (version (git-version "0.1.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://git.systemreboot.net/guile-email";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1037mbz7qd9bzaqp8ysyhnl9ipd97fmj3b9jr8qfzx9179vvsj63"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("autoconf" ,autoconf)
+ ("automake" ,automake)))
+ (inputs
- `(("guile" ,guile-2.2.4)))
++ `(("guile" ,guile-2.2)))
+ (home-page "https://git.systemreboot.net/guile-email";)
+ (synopsis "Guile email parser")
+ (description "This package provides an email parser written in pure
+ Guile.")
+ (license license:agpl3+))))
+
+ (define-public guile-debbugs-next
+ (let ((commit "75a331d561c8b6f8efcf16216dab961c17759efe")
+ (revision "1"))
+ (package (inherit guile-debbugs)
+ (name "guile-debbugs")
+ (version (git-version "0.0.3" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url
"https://git.savannah.gnu.org/git/guile-debbugs.git";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0br3mgbw41bpc9x57jlghl0i8dz9nl63r4wzs5l47aqszf84870y"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("texinfo" ,texinfo)))
+ (inputs
- `(("guile" ,guile-2.2.4)
++ `(("guile" ,guile-2.2)
+ ("guile-email" ,guile-email))))))
+
;; There has not been any release yet.
(define-public guile-newt
(let ((commit "4eaa3cf84b9b426cc0ff7bec48b76cca6ca3ec83")
diff --cc gnu/packages/mail.scm
index 35b7d27,fa545da..74b1d48
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@@ -2640,3 -2643,50 +2643,50 @@@ replacement for the @code{urlview} prog
"TNEF is a tar-like program that unpacks MIME attachments of type
@code{application/ms-tnef}.")
(license gpl2+)))
+
+ (define-public mumi
+ (let ((commit "bfd96ce76b4600ae232e6548b26c9365095fd174")
+ (revision "2"))
+ (package
+ (name "mumi")
+ (version (git-version "0.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://git.elephly.net/software/mumi.git";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "05miwfi1bh0v9x2gvn15bwkb3gn4xy53z506ysjzns2y497zkc5h"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'install 'wrap-executable
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin"))
+ (scm (string-append out "/share/guile/site/2.2"))
+ (go (string-append out "/lib/guile/2.2/site-ccache")))
+ (wrap-program (string-append bin "/mumi")
+ `("GUILE_LOAD_PATH" ":" prefix
+ (,scm ,(getenv "GUILE_LOAD_PATH")))
+ `("GUILE_LOAD_COMPILED_PATH" ":" prefix
+ (,go ,(getenv "GUILE_LOAD_COMPILED_PATH"))))
+ #t))))))
+ (inputs
+ `(("guile-debbugs" ,guile-debbugs-next)
+ ("guile-email" ,guile-email)
+ ("guile-fibers" ,guile-fibers)
+ ("guile-json" ,guile-json)
+ ("guile-syntax-highlight" ,guile-syntax-highlight)
- ("guile" ,guile-2.2.4)))
++ ("guile" ,guile-2.2)))
+ (native-inputs
+ `(("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("pkg-config" ,pkg-config)))
+ (home-page "https://git.elephly.net/software/mumi.git";)
+ (synopsis "Debbugs web interface")
+ (description "Mumi is a Debbugs web interface.")
+ (license agpl3+))))
diff --cc gnu/packages/pdf.scm
index 062ef02,9ffc5cb..28737c3
--- a/gnu/packages/pdf.scm
+++ b/gnu/packages/pdf.scm
@@@ -82,7 -82,8 +82,8 @@@
(define-public poppler
(package
(name "poppler")
+ (replacement poppler/fixed)
- (version "0.63.0")
+ (version "0.68.0")
(source (origin
(method url-fetch)
(uri (string-append "https://poppler.freedesktop.org/poppler-";