02/02: gnu: Add r-chipexoqual.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 41ffc214e4839aa50e9957388749772e91a3f533
Author: Ricardo Wurmus <address@hidden>
Date:   Tue Nov 27 23:23:20 2018 +0100

    gnu: Add r-chipexoqual.
    
    * gnu/packages/bioconductor.scm (r-chipexoqual): New variable.
---
 gnu/packages/bioconductor.scm | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 95c722a..e7f11de 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1030,3 +1030,41 @@ maps.")
      "This package provides tools to parse Illumina Sequence Analysis
 Viewer (SAV) files, access data, and generate QC plots.")
     (license license:agpl3+)))
+
+(define-public r-chipexoqual
+  (package
+    (name "r-chipexoqual")
+    (version "1.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "ChIPexoQual" version))
+       (sha256
+        (base32
+         "1773bpiybn4g9jlv46z29x19q4dpcvn7lairr3lq5pdqbqmz5hnp"))))
+    (properties `((upstream-name . "ChIPexoQual")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocparallel" ,r-biocparallel)
+       ("r-biovizbase" ,r-biovizbase)
+       ("r-broom" ,r-broom)
+       ("r-data-table" ,r-data-table)
+       ("r-dplyr" ,r-dplyr)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicalignments" ,r-genomicalignments)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-ggplot2" ,r-ggplot2)
+       ("r-hexbin" ,r-hexbin)
+       ("r-iranges" ,r-iranges)
+       ("r-rcolorbrewer" ,r-rcolorbrewer)
+       ("r-rmarkdown" ,r-rmarkdown)
+       ("r-rsamtools" ,r-rsamtools)
+       ("r-s4vectors" ,r-s4vectors)
+       ("r-scales" ,r-scales)
+       ("r-viridis" ,r-viridis)))
+    (home-page "https://github.com/keleslab/ChIPexoQual";)
+    (synopsis "Quality control pipeline for ChIP-exo/nexus data")
+    (description
+     "This package provides a quality control pipeline for ChIP-exo/nexus
+sequencing data.")
+    (license license:gpl2+)))