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02/03: gnu: Add r-dnacopy.
From: |
guix-commits |
Subject: |
02/03: gnu: Add r-dnacopy. |
Date: |
Tue, 12 Feb 2019 09:41:21 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c18dccffa20bf09826758210d457d1df477f959c
Author: Ricardo Wurmus <address@hidden>
Date: Tue Feb 12 13:07:15 2019 +0100
gnu: Add r-dnacopy.
* gnu/packages/bioconductor.scm (r-dnacopy): New variable.
---
gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 20aabb0..9057158 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -27,6 +27,7 @@
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
+ #:use-module (gnu packages gcc)
#:use-module (gnu packages graph)
#:use-module (gnu packages maths)
#:use-module (gnu packages statistics)
@@ -1176,3 +1177,25 @@ Viewer (SAV) files, access data, and generate QC plots.")
"This package provides a quality control pipeline for ChIP-exo/nexus
sequencing data.")
(license license:gpl2+)))
+
+(define-public r-dnacopy
+ (package
+ (name "r-dnacopy")
+ (version "1.56.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DNAcopy" version))
+ (sha256
+ (base32
+ "04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82"))))
+ (properties `((upstream-name . "DNAcopy")))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://bioconductor.org/packages/DNAcopy")
+ (synopsis "DNA copy number data analysis")
+ (description
+ "This package implements the @dfn{circular binary segmentation} (CBS)
+algorithm to segment DNA copy number data and identify genomic regions with
+abnormal copy number.")
+ (license license:gpl2+)))