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04/07: gnu: Add r-motiv.
From: |
guix-commits |
Subject: |
04/07: gnu: Add r-motiv. |
Date: |
Fri, 29 Mar 2019 12:13:54 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 229f97c37aef0f50d144524275315fd36cd5973a
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 29 14:59:23 2019 +0100
gnu: Add r-motiv.
* gnu/packages/bioconductor.scm (r-motiv): New variable.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6df46ef..63a1c99 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3209,3 +3209,34 @@ fitting a three-component normal mixture on z-scores.")
"rGADEM is an efficient de novo motif discovery tool for large-scale
genomic sequence data.")
(license license:artistic2.0)))
+
+(define-public r-motiv
+ (package
+ (name "r-motiv")
+ (version "1.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MotIV" version))
+ (sha256
+ (base32
+ "1qrpydwc5bn8f0843qkyhw6920xk8kvq452ird0ij96g6faiv9a8"))))
+ (properties `((upstream-name . "MotIV")))
+ (build-system r-build-system)
+ (inputs
+ `(("gsl" ,gsl)))
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-iranges" ,r-iranges)
+ ("r-lattice" ,r-lattice)
+ ("r-rgadem" ,r-rgadem)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/MotIV/")
+ (synopsis "Motif identification and validation")
+ (description
+ "This package is used for the identification and validation of sequence
+motifs. It makes use of STAMP for comparing a set of motifs to a given
+database (e.g. JASPAR). It can also be used to visualize motifs, motif
+distributions, modules and filter motifs.")
+ (license license:gpl2)))
- branch master updated (9398152 -> 32e0f90), guix-commits, 2019/03/29
- 03/07: gnu: Add r-rgadem., guix-commits, 2019/03/29
- 04/07: gnu: Add r-motiv.,
guix-commits <=
- 07/07: gnu: Add r-atacseqqc., guix-commits, 2019/03/29
- 05/07: gnu: Add r-motifstack., guix-commits, 2019/03/29
- 06/07: gnu: Add r-genomicscores., guix-commits, 2019/03/29
- 01/07: gnu: Add r-bacon., guix-commits, 2019/03/29
- 02/07: gnu: Add r-preseqr., guix-commits, 2019/03/29