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01/01: Merge branch 'master' into core-updates


From: guix-commits
Subject: 01/01: Merge branch 'master' into core-updates
Date: Fri, 6 Sep 2019 20:48:41 -0400 (EDT)

mhw pushed a commit to branch core-updates
in repository guix.

commit 65542a8852759f35e19959149ac92297c8b54be5
Merge: bc60349 f66aee3
Author: Mark H Weaver <address@hidden>
Date:   Fri Sep 6 20:46:00 2019 -0400

    Merge branch 'master' into core-updates

 Makefile.am                                        |     3 +
 README                                             |    36 +-
 doc/build.scm                                      |   115 +-
 doc/guix.texi                                      |   100 +-
 etc/guix-install.sh                                |    11 +
 gnu/bootloader.scm                                 |    36 +-
 gnu/local.mk                                       |     2 -
 gnu/packages/admin.scm                             |     4 +-
 gnu/packages/agda.scm                              |     2 +-
 gnu/packages/audio.scm                             |     4 +-
 .../aux-files/chromium/master-preferences.json     |     3 -
 gnu/packages/aux-files/linux-libre/5.2-arm64.conf  |     2 +-
 gnu/packages/base.scm                              |     4 +-
 gnu/packages/bioconductor.scm                      |   246 +-
 gnu/packages/bioinformatics.scm                    |    88 +-
 gnu/packages/bootloaders.scm                       |     6 +-
 gnu/packages/cdrom.scm                             |    12 +-
 gnu/packages/cedille.scm                           |     1 +
 gnu/packages/commencement.scm                      |    11 +-
 gnu/packages/conky.scm                             |     6 +-
 gnu/packages/cran.scm                              |   212 +-
 gnu/packages/crates-io.scm                         |  1400 ++-
 gnu/packages/cups.scm                              |    71 +-
 gnu/packages/databases.scm                         |     4 +-
 gnu/packages/dictionaries.scm                      |     4 +-
 gnu/packages/docker.scm                            |    46 +-
 gnu/packages/education.scm                         |     4 +-
 gnu/packages/emacs-xyz.scm                         |   553 +-
 gnu/packages/emacs.scm                             |     8 +-
 gnu/packages/emulators.scm                         |    16 +-
 gnu/packages/engineering.scm                       |    40 +-
 gnu/packages/enlightenment.scm                     |     4 +-
 gnu/packages/games.scm                             |     1 +
 gnu/packages/ghostscript.scm                       |     2 +-
 gnu/packages/gnome.scm                             |    53 +-
 gnu/packages/gnucash.scm                           |    24 +-
 gnu/packages/gnuzilla.scm                          |     4 +-
 gnu/packages/golang.scm                            |    66 +-
 gnu/packages/gps.scm                               |     4 +-
 gnu/packages/graphics.scm                          |     2 +-
 gnu/packages/guile-wm.scm                          |     4 +-
 gnu/packages/guile-xyz.scm                         |     9 +-
 gnu/packages/haskell-apps.scm                      |   313 +-
 gnu/packages/haskell-check.scm                     |    27 +-
 gnu/packages/haskell-web.scm                       |    54 +
 gnu/packages/haskell-xyz.scm                       | 11722 ++++++++++++++++++-
 gnu/packages/haskell.scm                           | 11292 +-----------------
 gnu/packages/idris.scm                             |     2 +-
 gnu/packages/image.scm                             |    85 +-
 gnu/packages/julia.scm                             |     4 +
 gnu/packages/libreoffice.scm                       |    11 +-
 gnu/packages/libusb.scm                            |    16 +-
 gnu/packages/linux.scm                             |    54 +-
 gnu/packages/lisp.scm                              |   161 +-
 gnu/packages/mail.scm                              |     4 +-
 gnu/packages/maths.scm                             |    38 +-
 gnu/packages/mp3.scm                               |     4 +-
 gnu/packages/music.scm                             |    54 +-
 gnu/packages/ocaml.scm                             |   257 +-
 gnu/packages/package-management.scm                |    11 +-
 .../patches/twinkle-include-qregexpvalidator.patch |   123 -
 .../patches/xfce4-session-fix-xflock4.patch        |    31 -
 gnu/packages/photo.scm                             |     4 +-
 gnu/packages/php.scm                               |     2 +-
 gnu/packages/python-xyz.scm                        |    23 +-
 gnu/packages/qt.scm                                |     6 +
 gnu/packages/rust.scm                              |    19 +-
 gnu/packages/samba.scm                             |    12 +-
 gnu/packages/statistics.scm                        |    22 +-
 gnu/packages/sync.scm                              |    10 +-
 gnu/packages/syncthing.scm                         |     6 +-
 gnu/packages/telephony.scm                         |    80 +-
 gnu/packages/terminals.scm                         |     4 +-
 gnu/packages/tex.scm                               |   394 +-
 gnu/packages/textutils.scm                         |    18 +-
 gnu/packages/upnp.scm                              |     4 +-
 gnu/packages/vim.scm                               |    10 +-
 gnu/packages/web-browsers.scm                      |    12 +-
 gnu/packages/web.scm                               |     8 +-
 gnu/packages/wine.scm                              |     6 +-
 gnu/packages/wm.scm                                |    10 +-
 gnu/packages/xfce.scm                              |   262 +-
 gnu/services/cups.scm                              |    25 +-
 gnu/services/web.scm                               |     3 +-
 gnu/system.scm                                     |    15 +
 gnu/system/linux-initrd.scm                        |     2 +-
 guix/build-system/cargo.scm                        |    11 +-
 guix/build-system/julia.scm                        |   130 +
 guix/build/cargo-build-system.scm                  |    14 +-
 guix/build/julia-build-system.scm                  |   135 +
 guix/build/lisp-utils.scm                          |    14 +-
 guix/bzr-download.scm                              |     3 +
 guix/ci.scm                                        |    68 +-
 guix/cvs-download.scm                              |     5 +-
 guix/git-download.scm                              |     3 +
 guix/hg-download.scm                               |     5 +-
 guix/import/cran.scm                               |    37 +-
 guix/import/crate.scm                              |   164 +-
 guix/import/opam.scm                               |     6 +-
 guix/json.scm                                      |    62 +
 guix/lint.scm                                      |   166 +-
 guix/scripts/deploy.scm                            |    12 +-
 guix/scripts/system.scm                            |     6 +-
 guix/svn-download.scm                              |     5 +-
 guix/swh.scm                                       |   123 +-
 guix/tests/http.scm                                |    39 +-
 nix/libstore/gc.cc                                 |     9 +-
 nix/libutil/util.cc                                |     2 +-
 po/doc/guix-manual.es.po                           |  1505 +--
 po/doc/guix-manual.fr.po                           |   206 +-
 tests/crate.scm                                    |    13 +-
 tests/derivations.scm                              |    12 +-
 tests/guix-build-branch.sh                         |     2 +-
 tests/lint.scm                                     |   179 +-
 tests/swh.scm                                      |    41 +-
 115 files changed, 17935 insertions(+), 13485 deletions(-)

diff --cc gnu/packages/maths.scm
index 5735c17,c81e999..16d3af3
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@@ -682,11 -682,10 +683,11 @@@ computations."
         (uri (string-append "https://support.hdfgroup.org/ftp/HDF/releases/HDF";
                             version "/src/hdf-" version ".tar.bz2"))
         (sha256
-         (base32 "1wz0586zh91pqb95wvr0pbh71a8rz358fdj6n2ksp85x2cis9lsm"))
+         (base32 "0n29klrrbwan9307np0d9hr128dlpc4nnlf57a140080ll3jmp8l"))
         (patches (search-patches "hdf4-architectures.patch"
                                  "hdf4-reproducibility.patch"
 -                                "hdf4-shared-fortran.patch"))))
 +                                "hdf4-shared-fortran.patch"
 +                                "hdf4-tirpc.patch"))))
      (build-system gnu-build-system)
      (native-inputs
       `(("gfortran" ,gfortran)



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