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21/21: gnu: Add r-variancepartition.
From: |
guix-commits |
Subject: |
21/21: gnu: Add r-variancepartition. |
Date: |
Sun, 15 Sep 2019 17:02:29 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit d80a15696bf07a35b523c062a592a4b210bd3fdf
Author: Ricardo Wurmus <address@hidden>
Date: Sun Sep 15 22:57:47 2019 +0200
gnu: Add r-variancepartition.
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
---
gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ec3451b..7ca6788 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6006,3 +6006,44 @@ same genome coordinate system.")
"This package is designed to conduct transcriptome analysis for tiling
arrays based on fast wavelet-based functional models.")
(license license:gpl2+)))
+
+(define-public r-variancepartition
+ (package
+ (name "r-variancepartition")
+ (version "1.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "variancePartition" version))
+ (sha256
+ (base32
+ "1ycapwb2mq57xibrzzjz9zwxqz4nwz9f3n5gskhlr5vcs7irkjd6"))))
+ (properties
+ `((upstream-name . "variancePartition")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-colorramps" ,r-colorramps)
+ ("r-doparallel" ,r-doparallel)
+ ("r-foreach" ,r-foreach)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gplots" ,r-gplots)
+ ("r-iterators" ,r-iterators)
+ ("r-limma" ,r-limma)
+ ("r-lme4" ,r-lme4)
+ ("r-lmertest" ,r-lmertest)
+ ("r-mass" ,r-mass)
+ ("r-pbkrtest" ,r-pbkrtest)
+ ("r-progress" ,r-progress)
+ ("r-reshape2" ,r-reshape2)
+ ("r-scales" ,r-scales)))
+ (home-page "https://bioconductor.org/packages/variancePartition/")
+ (synopsis "Analyze variation in gene expression experiments")
+ (description
+ "This is a package providing tools to quantify and interpret multiple
+sources of biological and technical variation in gene expression experiments.
+It uses a linear mixed model to quantify variation in gene expression
+attributable to individual, tissue, time point, or technical variables. The
+package includes dream differential expression analysis for repeated
+measures.")
+ (license license:gpl2+)))
- 04/21: gnu: Add r-affycomp., (continued)
- 04/21: gnu: Add r-affycomp., guix-commits, 2019/09/15
- 02/21: gnu: Add r-timeseriesexperiment., guix-commits, 2019/09/15
- 01/21: gnu: Add r-wavcluster., guix-commits, 2019/09/15
- 05/21: gnu: Add r-affycompatible., guix-commits, 2019/09/15
- 08/21: gnu: Add r-reportingtools., guix-commits, 2019/09/15
- 06/21: gnu: Add r-affycontam., guix-commits, 2019/09/15
- 07/21: gnu: Add r-pfam-db., guix-commits, 2019/09/15
- 13/21: gnu: Add js-requirejs., guix-commits, 2019/09/15
- 18/21: gnu: Add r-oligo., guix-commits, 2019/09/15
- 19/21: gnu: Add r-genomegraphs., guix-commits, 2019/09/15
- 21/21: gnu: Add r-variancepartition.,
guix-commits <=
- 12/21: gnu: Add r-reqon., guix-commits, 2019/09/15
- 14/21: gnu: Add r-shinytree., guix-commits, 2019/09/15
- 11/21: gnu: Add r-seqbias., guix-commits, 2019/09/15
- 15/21: gnu: Add r-shinythemes., guix-commits, 2019/09/15
- 10/21: gnu: Add r-affycoretools., guix-commits, 2019/09/15
- 09/21: gnu: Add r-oligoclasses., guix-commits, 2019/09/15
- 17/21: gnu: Add r-affxparser., guix-commits, 2019/09/15
- 16/21: gnu: Add r-variantfiltering., guix-commits, 2019/09/15
- 20/21: gnu: Add r-wavetiling., guix-commits, 2019/09/15