branch core-updates updated (e08902d -> 4d8d2fb)

[guix-commits]

civodul pushed a change to branch core-updates
in repository guix.

      from  e08902d   Merge branch 'master' into core-updates
      adds  4722330   gnu: nss-pam-ldapd: Update to 0.9.11.
      adds  45d04b2   gnu: emacs-helm: Update to 3.5.0.
      adds  cb21975   gnu: Add emacs-helm-org.
      adds  d050fdf   gnu: emacs-helm-ag: Fix version.
      adds  122c1b3   gnu: r-biomart: Update to 2.40.5.
      adds  94638cb   gnu: r-rsamtools: Update to 2.0.2.
      adds  3365104   gnu: r-seurat: Update to 3.1.1.
      adds  82acc94   gnu: r-htmltools: Update to 0.4.0.
      adds  ff74344   gnu: r-htmlwidgets: Update to 1.5.
      adds  b7e7c32   gnu: r-maptools: Update to 0.9-8.
      adds  ab99236   gnu: r-later: Update to 1.0.0.
      adds  2e6ccd6   gnu: r-promises: Update to 1.1.0.
      adds  7703211   gnu: r-hdf5r: Update to 1.3.0.
      adds  9b112f4   gnu: r-rcppparallel: Update to 4.4.4.
      adds  f817005   gnu: r-gargle: Update to 0.4.0.
      adds  07d0645   gnu: r-backports: Update to 1.1.5.
      adds  1c2e573   gnu: r-regioner: Update to 1.16.5.
      adds  eb796f5   gnu: r-mixomics: Update to 6.8.5.
      adds  326746e   gnu: r-variancepartition: Update to 1.14.1.
      adds  b442713   gnu: emacs-deadgrep: Update to 0.8-2.3fc7ca1.
      adds  47467ce   gnu: Add emacs-peg.
      adds  3f68853   gnu: emacs-evil-traces: Update to 0.0.1-2.1931e3e.
      adds  4f2a3fb   gnu: emacs-evil-nerd-commenter: Update to 3.3.8.
      adds  4261a9d   gnu: emacs-mbsync: Update to 0.1.2-4.b62491c.
      adds  d3e22bc   gnu: icedtea-7: Support non-Intel systems.
      adds  7b6a8e2   gnu: aria2: Update to 1.35.0.
      adds  048d21a   gnu: icedtea-7: Avoid massive rebuild.
      adds  7d82e92   gnu: linux-libre: Update to 5.3.4.
      adds  85747ba   gnu: sbcl-optima: Fix version number
      adds  7baaf7f   gnu: Add cl-fare-quasiquote.
      adds  06e2da7   gnu: Add fare-quasiquote-optima.
      adds  7b9cb9c   gnu: Add cl-fare-quasiquote-readtable.
      adds  6fdb5b7   gnu: Add cl-fare-quasiquote-extras.
      adds  3658db3   gnu: Add string-case.
      adds  003a714   gnu: Add global-vars.
      adds  c6dd9cf   gnu: Add trivial-file-size.
      adds  fa4bbd9   gnu: Add trivial-macroexpand-all.
      adds  fa984fa   gnu: jack-2: Update to 1.9.13.
       new  4d8d2fb   Merge branch 'master' into core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/local.mk                                   |   1 -
 gnu/packages/audio.scm                         |  42 +++---
 gnu/packages/bioconductor.scm                  |  13 +-
 gnu/packages/bioinformatics.scm                |  13 +-
 gnu/packages/bittorrent.scm                    |  13 +-
 gnu/packages/cran.scm                          |  49 +++----
 gnu/packages/emacs-xyz.scm                     |  75 ++++++++---
 gnu/packages/java.scm                          |  15 ++-
 gnu/packages/linux.scm                         |   8 +-
 gnu/packages/lisp.scm                          | 178 ++++++++++++++++++++++++-
 gnu/packages/openldap.scm                      |   6 +-
 gnu/packages/patches/aria2-CVE-2019-3500.patch |  55 --------
 gnu/packages/statistics.scm                    |   4 +-
 13 files changed, 315 insertions(+), 157 deletions(-)
 delete mode 100644 gnu/packages/patches/aria2-CVE-2019-3500.patch