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02/05: gnu: mumps: Build and install shared libraries.
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guix-commits |
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Subject: |
02/05: gnu: mumps: Build and install shared libraries. |
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Date: |
Mon, 14 Oct 2019 12:25:40 -0400 (EDT) |
civodul pushed a commit to branch master
in repository guix.
commit 06e1239502e7cc91f62161f8bab35bbe0119f2e5
Author: Maurice Brémond <address@hidden>
Date: Mon Oct 14 17:44:54 2019 +0200
gnu: mumps: Build and install shared libraries.
* gnu/packages/patches/mumps-shared-libseq.patch,
gnu/packages/patches/mumps-shared-mumps.patch,
gnu/packages/patches/mumps-shared-pord.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mumps)[source](patches): Add them.
[arguments]: In 'configure' phase, adjust "Makefile.inc" for shared
library support. In 'install' phase, install libmpiseq.so when it
exists.
Co-authored-by: Ludovic Courtès <address@hidden>
---
gnu/local.mk | 3 +
gnu/packages/maths.scm | 23 +++++---
gnu/packages/patches/mumps-shared-libseq.patch | 42 ++++++++++++++
gnu/packages/patches/mumps-shared-mumps.patch | 63 +++++++++++++++++++++
gnu/packages/patches/mumps-shared-pord.patch | 77 ++++++++++++++++++++++++++
5 files changed, 200 insertions(+), 8 deletions(-)
diff --git a/gnu/local.mk b/gnu/local.mk
index 3caaec4..6ec1bbf 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1132,6 +1132,9 @@ dist_patch_DATA =
\
%D%/packages/patches/mtools-mformat-uninitialized.patch \
%D%/packages/patches/mumble-1.2.19-abs.patch \
%D%/packages/patches/mumps-build-parallelism.patch \
+ %D%/packages/patches/mumps-shared-libseq.patch \
+ %D%/packages/patches/mumps-shared-mumps.patch \
+ %D%/packages/patches/mumps-shared-pord.patch \
%D%/packages/patches/mupen64plus-ui-console-notice.patch \
%D%/packages/patches/mupen64plus-video-z64-glew-correct-path.patch \
%D%/packages/patches/mutt-store-references.patch \
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index ee633e3..06b34e2 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2180,7 +2180,10 @@ bindings to almost all functions of SLEPc.")
(sha256
(base32
"0jklh54x4y3ik1zkw6db7766kakjm5910diyaghfxxf8vwsgr26r"))
- (patches (search-patches "mumps-build-parallelism.patch"))))
+ (patches (search-patches "mumps-build-parallelism.patch"
+ "mumps-shared-libseq.patch"
+ "mumps-shared-mumps.patch"
+ "mumps-shared-pord.patch"))))
(build-system gnu-build-system)
(inputs
`(("fortran" ,gfortran)
@@ -2210,15 +2213,17 @@ CC = gcc
FC = gfortran
FL = gfortran
INCSEQ = -I$(topdir)/libseq
-LIBSEQ = -L$(topdir)/libseq -lmpiseq
+LIBSEQ = $(topdir)/libseq/libmpiseq.a
LIBSEQNEEDED = libseqneeded~;
CC = mpicc
FC = mpifort
FL = mpifort~]
AR = ar vr # rules require trailing space, ugh...
RANLIB = ranlib
-LIBBLAS = -L~a -lopenblas~@[
-SCALAP = -L~a -lscalapack~]
+BLASDIR = ~a
+LIBBLAS = -Wl,-rpath=$(BLASDIR) -Wl,-rpath='$$ORIGIN' -L$(BLASDIR)
-lopenblas~@[
+SCALAPDIR = ~a
+SCALAP = -Wl,-rpath=$(SCALAPDIR) -Wl,-rpath='$$ORIGIN' -L$(SCALAPDIR)
-lscalapack~]
LIBOTHERS = -pthread
CDEFS = -DAdd_
PIC = -fPIC
@@ -2229,18 +2234,18 @@ INCS = $(INCSEQ)
LIBS = $(SCALAP) $(LIBSEQ)
LPORDDIR = $(topdir)/PORD/lib
IPORD = -I$(topdir)/PORD/include
-LPORD = -L$(LPORDDIR) -lpord
+LPORD = $(LPORDDIR)/libpord.a
ORDERINGSF = -Dpord~@[
METISDIR = ~a
IMETIS = -I$(METISDIR)/include
-LMETIS = -L$(METISDIR)/lib -lmetis
+LMETIS = -Wl,-rpath $(METISDIR)/lib -L$(METISDIR)/lib -lmetis
ORDERINGSF += -Dmetis~]~@[~:{
SCOTCHDIR = ~a
ISCOTCH = -I$(SCOTCHDIR)/include
-LSCOTCH = -L$(SCOTCHDIR)/lib ~a-lesmumps -lscotch -lscotcherr
+LSCOTCH = -Wl,-rpath $(SCOTCHDIR)/lib -L$(SCOTCHDIR)/lib ~a-lesmumps
-lscotch -lscotcherr
ORDERINGSF += ~a~}~]
ORDERINGSC = $(ORDERINGSF)
-LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH)
+LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH) $(LIBSEQ)
IORDERINGSF = $(ISCOTCH)
IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)"
(assoc-ref inputs "mpi")
@@ -2294,6 +2299,8 @@ IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)"
(copy-recursively "include" (string-append out "/include"))
(when (file-exists? "libseq/libmpiseq.a")
(install-file "libseq/libmpiseq.a" libdir))
+ (when (file-exists? "libseq/libmpiseq.so")
+ (install-file "libseq/libmpiseq.so" libdir))
#t))))))
(home-page "http://mumps.enseeiht.fr";)
(synopsis "Multifrontal sparse direct solver")
diff --git a/gnu/packages/patches/mumps-shared-libseq.patch
b/gnu/packages/patches/mumps-shared-libseq.patch
new file mode 100644
index 0000000..feafcf1
--- /dev/null
+++ b/gnu/packages/patches/mumps-shared-libseq.patch
@@ -0,0 +1,42 @@
+Create a shared version of the sequential library, MUST BE LAST IN SERIES
+
+Index: mumps/libseq/Makefile
+===================================================================
+--- mumps.orig/libseq/Makefile
++++ mumps/libseq/Makefile
+@@ -8,15 +8,17 @@ all: libmpiseq
+
+ include ../Makefile.inc
+
+-libmpiseq: libmpiseq$(PLAT)$(LIBEXT)
++libmpiseq: libmpiseq$(PLAT).a libmpiseq$(PLAT).so
+
+-libmpiseq$(PLAT)$(LIBEXT): mpi.o mpic.o elapse.o
+- $(AR)$@ mpi.o mpic.o elapse.o
++libmpiseq$(PLAT).a: mpi.o mpic.o elapse.o
++ $(AR) $@ mpi.o mpic.o elapse.o
+ $(RANLIB) $@
++libmpiseq$(PLAT).so: mpi.o mpic.o elapse.o
++ $(FC) -shared $^ -Wl,-soname,libmpiseq$(PLAT)-5.1.2.so -o
libmpiseq$(PLAT)-5.1.2.so -Wl,-z,defs
+ .f.o:
+- $(FC) $(OPTF) -c $*.f $(OUTF)$*.o
++ $(FC) $(OPTF) -fPIC -c $*.f $(OUTF)$*.o
+ .c.o:
+- $(CC) $(OPTC) $(CDEFS) -I. -c $*.c $(OUTC)$*.o
++ $(CC) $(OPTC) $(CDEFS) -I. -fPIC -c $*.c $(OUTC)$*.o
+
+ clean:
+- $(RM) *.o *$(LIBEXT)
++ $(RM) *.o *.a *.so
+Index: mumps/Makefile
+===================================================================
+--- mumps.orig/Makefile
++++ mumps/Makefile
+@@ -60,6 +60,7 @@ requiredobj: Makefile.inc $(LIBSEQNEEDED
+
+ libseqneeded:
+ (cd libseq; $(MAKE))
++ cp libseq/lib* $(libdir)
+
+ # Build the libpord.a library and copy it into $(topdir)/lib
+ $(libdir)/libpord$(PLAT).a:
diff --git a/gnu/packages/patches/mumps-shared-mumps.patch
b/gnu/packages/patches/mumps-shared-mumps.patch
new file mode 100644
index 0000000..9e2491f
--- /dev/null
+++ b/gnu/packages/patches/mumps-shared-mumps.patch
@@ -0,0 +1,63 @@
+Create a shared version of the MUMPS library.
+
+Index: mumps/src/Makefile
+===================================================================
+--- mumps.orig/src/Makefile
++++ mumps/src/Makefile
+@@ -23,8 +23,10 @@ z:
+
+ include $(topdir)/Makefile.inc
+
+-mumps_lib: $(libdir)/libmumps_common$(PLAT)$(LIBEXT) \
+- $(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT)
++mumps_lib: $(libdir)/libmumps_common$(PLAT).a \
++ $(libdir)/libmumps_common$(PLAT).so \
++ $(libdir)/lib$(ARITH)mumps$(PLAT).a \
++ $(libdir)/lib$(ARITH)mumps$(PLAT).so
+
+ OBJS_COMMON_MOD = \
+ lr_common.o \
+@@ -167,14 +169,22 @@ OBJS_OTHER = \
+ $(ARITH)tools.o\
+ $(ARITH)type3_root.o
+
+-$(libdir)/libmumps_common$(PLAT)$(LIBEXT): $(OBJS_COMMON_MOD)
$(OBJS_COMMON_OTHER)
+- $(AR)$@ $?
++$(libdir)/libmumps_common$(PLAT).a: $(OBJS_COMMON_MOD)
$(OBJS_COMMON_OTHER)
++ $(AR) $@ $?
+ $(RANLIB) $@
+
+-$(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT): $(OBJS_MOD) $(OBJS_OTHER)
+- $(AR)$@ $?
++$(libdir)/libmumps_common$(PLAT).so: $(OBJS_COMMON_MOD)
$(OBJS_COMMON_OTHER)
++ $(FC) -shared $^ -Wl,-soname,libmumps_common$(PLAT)-5.1.2.so
-L$(libdir) $(LORDERINGS) -lpthread $(MPIFLIB) $(MPICLIB) $(LEXTRAS) -o
$(libdir)/libmumps_common$(PLAT)-5.1.2.so -Wl,-z,defs
++ ln -s libmumps_common$(PLAT)-5.1.2.so $@
++
++$(libdir)/lib$(ARITH)mumps$(PLAT).a: $(OBJS_MOD) $(OBJS_OTHER)
++ $(AR) $@ $?
+ $(RANLIB) $@
+
++$(libdir)/lib$(ARITH)mumps$(PLAT).so: $(OBJS_MOD) $(OBJS_OTHER)
++ $(FC) -shared $^ -Wl,-soname,lib$(ARITH)mumps$(PLAT)-5.1.2.so
-L$(libdir) -lmumps_common$(PLAT) $(LORDERINGS) $(MPIFLIB) $(LEXTRAS)
$(LIBBLAS) $(SCALAP) $(LAPACK) -o $(libdir)/lib$(ARITH)mumps$(PLAT)-5.1.2.so
-Wl,-z,defs
++ ln -s lib$(ARITH)mumps$(PLAT)-5.1.2.so $@
++
+ # Dependencies between modules:
+ $(ARITH)mumps_load.o: $(ARITH)mumps_comm_buffer.o \
+ $(ARITH)mumps_struc_def.o \
+@@ -290,13 +300,13 @@ $(OBJS_OTHER):$(OBJS_COMMON_MOD) $(OBJS_
+
+ .SUFFIXES: .c .F .o
+ .F.o:
+- $(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include -c
$*.F $(OUTF)$*.o
++ $(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include
-fPIC -c $*.F $(OUTF)$*.o
+ .c.o:
+- $(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC)
$(ORDERINGSC) -c $*.c $(OUTC)$*.o
++ $(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC)
$(ORDERINGSC) -fPIC -c $*.c $(OUTC)$*.o
+
+ $(ARITH)mumps_c.o: mumps_c.c
+ $(CC) $(OPTC) $(INCS) $(CDEFS) -DMUMPS_ARITH=MUMPS_ARITH_$(ARITH) \
+- $(IORDERINGSC) $(ORDERINGSC) -I../include -c mumps_c.c $(OUTC)$@
++ $(IORDERINGSC) $(ORDERINGSC) -I../include -fPIC -c mumps_c.c
$(OUTC)$@
+
+
+ clean:
diff --git a/gnu/packages/patches/mumps-shared-pord.patch
b/gnu/packages/patches/mumps-shared-pord.patch
new file mode 100644
index 0000000..48062d4
--- /dev/null
+++ b/gnu/packages/patches/mumps-shared-pord.patch
@@ -0,0 +1,77 @@
+Create static and shared versions of the PORD library.
+
+Index: mumps/PORD/lib/Makefile
+===================================================================
+--- mumps.orig/PORD/lib/Makefile
++++ mumps/PORD/lib/Makefile
+@@ -9,7 +9,7 @@
+
+ INCLUDES = -I../include
+
+-COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS)
++COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS) -fPIC
+
+ OBJS = graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o \
+ multisector.o gelim.o bucket.o tree.o \
+@@ -24,12 +24,16 @@ OBJS = graph.o gbipart.o gbisect.o ddcre
+ .c.o:
+ $(CC) $(COPTIONS) -c $*.c $(OUTC)$*.o
+
+-libpord$(LIBEXT):$(OBJS)
+- $(AR)$@ $(OBJS)
++libpord$(PLAT).a:$(OBJS)
++ $(AR) $@ $(OBJS)
+ $(RANLIB) $@
+
++libpord$(PLAT).so: $(OBJS)
++ $(CC) -shared $(OBJS) -Wl,-soname,libpord$(PLAT)-5.1.2.so -o
libpord$(PLAT)-5.1.2.so -Wl,-z,defs
++ ln -s libpord$(PLAT)-5.1.2.so $@
++
+ clean:
+ rm -f *.o
+
+ realclean:
+- rm -f *.o libpord.a
++ rm -f *.o libpord*.a *.so
+Index: mumps/Makefile
+===================================================================
+--- mumps.orig/Makefile
++++ mumps/Makefile
+@@ -54,7 +54,7 @@ dexamples: d
+ multi_example: s d c z
+ (cd examples ; $(MAKE) multi)
+
+-requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT)$(LIBEXT)
++requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT).a
$(libdir)/libpord$(PLAT).so
+
+ # dummy MPI library (sequential version)
+
+@@ -62,19 +62,25 @@ libseqneeded:
+ (cd libseq; $(MAKE))
+
+ # Build the libpord.a library and copy it into $(topdir)/lib
+-$(libdir)/libpord$(PLAT)$(LIBEXT):
++$(libdir)/libpord$(PLAT).a:
+ if [ "$(LPORDDIR)" != "" ] ; then \
+ cd $(LPORDDIR); \
+ $(MAKE) CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" RANLIB="$(RANLIB)"
OUTC="$(OUTC)" LIBEXT=$(LIBEXT); \
+ fi;
+ if [ "$(LPORDDIR)" != "" ] ; then \
+- cp $(LPORDDIR)/libpord$(LIBEXT) $@; \
++ cp $(LPORDDIR)/libpord$(PLAT).a $@; \
+ fi;
+
++$(libdir)/libpord$(PLAT).so:
++ if [ "$(LPORDDIR)" != "" ] ; then \
++ cd $(LPORDDIR); make CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" ARFUNCT=
RANLIB="$(RANLIB)" libpord$(PLAT).so; fi;
++ if [ "$(LPORDDIR)" != "" ] ; then \
++ cp -a $(LPORDDIR)/libpord*.so lib/; fi;
++
+ clean:
+ (cd src; $(MAKE) clean)
+ (cd examples; $(MAKE) clean)
+- (cd $(libdir); $(RM) *$(PLAT)$(LIBEXT))
++ (cd $(libdir); $(RM) *$(PLAT).a *$(PLAT).so)
+ (cd libseq; $(MAKE) clean)
+ if [ "$(LPORDDIR)" != "" ] ; then \
+ cd $(LPORDDIR); $(MAKE) realclean; \